PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0480.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 288aa    MW: 32168.5 Da    PI: 9.4524
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0480.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.11.4e-11262286125
                 G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                             k+r++W+peLH+rFv+a++qLGGs+
  SapurV1A.0090s0480.3.p 262 KQRRCWSPELHRRFVNALQQLGGSQ 286
                             79*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-8260285IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-7262284IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGSLSAELSL DFARPSTAKT LPFLPKTITD FLKEVSVIGD SAVKVLKVDG FIKDLEEEKR  60
KIDAFKREMP LCMLLLNDAI QVLRDELMQR GASKNQQPVL EEFIPLKKKF DDDHENDGLI  120
KKEKDSKDKK NWMSSVQLWN ADDHRPSTDY LFDPKQNLKL ESKTNKKGNQ YGNEDTFQAC  180
IGRTAARTFM PFKACSGLSS QEDKLPVPAL SLLTPGIKSL KEESNSTGSR SSCSRSVSTT  240
SAPNSDSNLR NGPQSQQQTA RKQRRCWSPE LHRRFVNALQ QLGGSQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0480.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472190.0EF147219.1 Populus trichocarpa clone WS01229_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313089.10.0myb family transcription factor EFM isoform X1
RefseqXP_024463735.10.0myb family transcription factor EFM isoform X2
TrEMBLA0A2I4KKE20.0A0A2I4KKE2_POPTR; G2-like family protein
STRINGPOPTR_0009s10980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.17e-33G2-like family protein