PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0090s0480.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 407aa    MW: 44929.3 Da    PI: 8.4562
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0090s0480.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.3e-33262317156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  SapurV1A.0090s0480.2.p 262 KQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 317
                             79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.115259319IPR017930Myb domain
SuperFamilySSF466893.29E-18259320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29260320IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-27262317IPR006447Myb domain, plants
PfamPF002496.4E-8264315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGSLSAELSL DFARPSTAKT LPFLPKTITD FLKEVSVIGD SAVKVLKVDG FIKDLEEEKR  60
KIDAFKREMP LCMLLLNDAI QVLRDELMQR GASKNQQPVL EEFIPLKKKF DDDHENDGLI  120
KKEKDSKDKK NWMSSVQLWN ADDHRPSTDY LFDPKQNLKL ESKTNKKGNQ YGNEDTFQAC  180
IGRTAARTFM PFKACSGLSS QEDKLPVPAL SLLTPGIKSL KEESNSTGSR SSCSRSVSTT  240
SAPNSDSNLR NGPQSQQQTA RKQRRCWSPE LHRRFVNALQ QLGGSQAATP KQIRELMQVD  300
GLTNDEVKSH LQKYRLHTRR VTPSTAAAPA NQSIDLGGLW MTPDQYGDSS KATSSQSGSP  360
QGPLQLAVNT GGTSTTGGDS MEDDEDAKSE GYSWKSHIQR SGKDDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14262315154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14262315255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0090s0480.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472190.0EF147219.1 Populus trichocarpa clone WS01229_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313089.10.0myb family transcription factor EFM isoform X1
TrEMBLA0A2I4KKE20.0A0A2I4KKE2_POPTR; G2-like family protein
STRINGPOPTR_0009s10980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-61G2-like family protein