PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0090s0480.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 412aa MW: 45410.8 Da PI: 8.2089 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.5 | 8.2e-30 | 262 | 322 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek.....AtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ SapurV1A.0090s0480.1.p 262 KQRRCWSPELHRRFVNALQQLGGSQDahsaaATPKQIRELMQVDGLTNDEVKSHLQKYRLH 322 79*********************975233337***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.891 | 259 | 324 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-16 | 259 | 325 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-28 | 260 | 325 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 262 | 322 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 264 | 320 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGSLSAELSL DFARPSTAKT LPFLPKTITD FLKEVSVIGD SAVKVLKVDG FIKDLEEEKR 60 KIDAFKREMP LCMLLLNDAI QVLRDELMQR GASKNQQPVL EEFIPLKKKF DDDHENDGLI 120 KKEKDSKDKK NWMSSVQLWN ADDHRPSTDY LFDPKQNLKL ESKTNKKGNQ YGNEDTFQAC 180 IGRTAARTFM PFKACSGLSS QEDKLPVPAL SLLTPGIKSL KEESNSTGSR SSCSRSVSTT 240 SAPNSDSNLR NGPQSQQQTA RKQRRCWSPE LHRRFVNALQ QLGGSQDAHS AAATPKQIRE 300 LMQVDGLTND EVKSHLQKYR LHTRRVTPST AAAPANQSID LGGLWMTPDQ YGDSSKATSS 360 QSGSPQGPLQ LAVNTGGTST TGGDSMEDDE DAKSEGYSWK SHIQRSGKDD V* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0090s0480.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147219 | 0.0 | EF147219.1 Populus trichocarpa clone WS01229_I10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313089.1 | 0.0 | myb family transcription factor EFM isoform X1 | ||||
TrEMBL | A0A2I4KKE2 | 0.0 | A0A2I4KKE2_POPTR; G2-like family protein | ||||
STRING | POPTR_0009s10980.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 7e-59 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0090s0480.1.p |