PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0090s0340.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 296aa MW: 33990.4 Da PI: 9.3172 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.1 | 5.7e-12 | 6 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f++l+ s++ +++rl++p +f++++g++ ++l + g + ++ l k +++ ++ +GW++Fv+ + +g f++F+++g+ f SapurV1A.0090s0340.2.p 6 FQKLILSSTIREKRLRIPDNFVKKFGHDI--LSFVRLVVPGGHVSRIGL--IKVDDKLWFHDGWQQFVERFSIHVGYFLIFRYEGNAIF 90 67788899999**************9884..447***************..999999**************************998888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v++f+ SapurV1A.0090s0340.2.p 91 --NVHIFN 96 ..888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-19 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-19 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.82E-18 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 10.25 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-11 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-9 | 6 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MPRPYFQKLI LSSTIREKRL RIPDNFVKKF GHDILSFVRL VVPGGHVSRI GLIKVDDKLW 60 FHDGWQQFVE RFSIHVGYFL IFRYEGNAIF NVHIFNLPAS EINYHSNSLG GKRYLAFEEL 120 DNDDNADNPG IPPSQLMVNK NFNPPSLQNL FSGSKLNNCI NWSAEETMRL TKGTNISQVA 180 NESAQNVGAH YNELYNSQDE VKLYSPDGET PKPKKRGRKR LKADPNEQQL SSPHDDDSEM 240 RFRFYESASA RKRTVTAEER ERAMNAAKAY APDNPYCRVV LRPSYLYRGC IMVSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-21 | 243 | 292 | 15 | 64 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-21 | 243 | 292 | 15 | 64 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 222 | GRKRLKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0090s0340.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379217.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 2e-88 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | U5G3W5 | 0.0 | U5G3W5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s11170.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-84 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0090s0340.2.p |
Publications ? help Back to Top | |||
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