PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0089s0170.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 308aa MW: 33808 Da PI: 5.8866 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 5.2e-34 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl SapurV1A.0089s0170.2.p 28 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.485 | 25 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-32 | 27 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-18 | 27 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 111 | 157 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDLDCEAMTM DPINGGKSLN NNPNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL 60 RVMGVQGLTI YHVKSHLQKY RLAKYLPDST SDVDKKETGD MLSNLDGPSG MQITEALKLQ 120 MEVQKRLHEQ LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLEDVPGSGV SAPVSGDNCP 180 ESDNKTDPAT PAPTSESSLQ DKATKECAPT KSLSIDGSFS SQHEPLTPDS RCNTDSPAES 240 PRGERTMKKQ RVSMGAAFGK PEMVLTHQIL ESSLNSYPQP HSAFLTREQF DPPSGLSMGN 300 EDQSEKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-24 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0089s0170.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224847 | 0.0 | CU224847.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443123.1 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 1e-130 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2K1X8H0 | 0.0 | A0A2K1X8H0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s00310.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-117 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0089s0170.2.p |