PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0089s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 311aa    MW: 34121.4 Da    PI: 6.3198
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0089s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.3e-342882155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  SapurV1A.0089s0170.1.p 28 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 82
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4852585IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-322783IPR009057Homeodomain-like
SuperFamilySSF466897.7E-182782IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-252883IPR006447Myb domain, plants
PfamPF002491.2E-93081IPR001005SANT/Myb domain
PfamPF143791.6E-23114160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDLDCEAMTM DPINGGKSLN NNPNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL  60
RVMGVQGLTI YHVKSHLQKY RLAKYLPDST SDGKKVDKKE TGDMLSNLDG PSGMQITEAL  120
KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLEDVPG SGVSAPVSGD  180
NCPESDNKTD PATPAPTSES SLQDKATKEC APTKSLSIDG SFSSQHEPLT PDSRCNTDSP  240
AESPRGERTM KKQRVSMGAA FGKPEMVLTH QILESSLNSY PQPHSAFLTR EQFDPPSGLS  300
MGNEDQSEKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-242885158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-242885259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0089s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248470.0CU224847.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373551.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-135PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLB9N3W80.0B9N3W8_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-121G2-like family protein