PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0089s0160.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 315aa MW: 33991.5 Da PI: 6.4227

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0089s0160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.2e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+il++m+vkgLtl h+kSHLQkYRl SapurV1A.0089s0160.1.p 43 KPRLRWTADLHQRFVDAVSQLGGPNKATPKAILRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.643	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-31	40	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-25	43	98	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.6E-17	43	99	IPR009057	Homeodomain-like
Pfam	PF00249	6.1E-8	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-15	141	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MLESRGIGIG GMIMEEMHQN QSGIGIGLGM QVGAQVVMTS DPKPRLRWTA DLHQRFVDAV 60 SQLGGPNKAT PKAILRTMNV KGLTLFHLKS HLQKYRLGKQ SGKDMSDTFK DGLSGSYLLE 120 NPCTGNSSLN MTASDVNEGY EVKEALRAQM EVQSKLHLQV EAEKHLHIRQ DAERRYLAML 180 ERACKMLADQ FIGAAVIDTD NQKGVGTKTT RIASLDPLGF YSLQTSEVAE VYGPEDVLPS 240 LHHQGADCST ESCLTSNESP GGLNLEGSPA GGKKGMLSLE SATSLIWGET KMGTAEVNAS 300 QVNSYGTSLY GIWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0089s0160.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006373552.1	0.0	protein PHR1-LIKE 3 isoform X1
Swissprot	Q8LAJ7	2e-59	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	U5FM90	0.0	U5FM90_POPTR; G2-like family protein
STRING	POPTR_0016s00320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0089s0160.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]