PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0087s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 320aa    MW: 35469.7 Da    PI: 9.6976
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0087s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.7e-13556147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                            +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
  SapurV1A.0087s0150.1.p  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQRDPEfnpylYSRSNIDLKDKWRNM 56
                            79************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.812161IPR017930Myb domain
SuperFamilySSF466892.23E-16258IPR009057Homeodomain-like
SMARTSM007171.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-14556IPR009057Homeodomain-like
PfamPF002496.7E-9556IPR001005SANT/Myb domain
CDDcd116601.06E-20657No hitNo description
SuperFamilySSF467853.1E-16113196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-15113191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.1E-19114179IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.494116184IPR005818Linker histone H1/H5, domain H15
PfamPF005381.0E-10118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQRDPEFNPY LYSRSNIDLK DKWRNMTVSA  60
GSQSVKDKSR TLKARPNPDA AAHVAASTPL SNPHSSAAAD DVVFDDSSEA AADSKTAPKY  120
NAMIFEAISA LNEPNGADTS AIISYIERRQ ELPQNFRRQL SSRLRRLLAQ EKLEKVQNCY  180
KIKKSSSFGT KTPTPKQKEM RPKPVQNIDH INSGDTVTEA ADDAAYMVAE AENKSFVATE  240
AVKESERVSK MAEDANSLLQ LANEILEKWS VESKKGQRNK STGSSLSLLQ QQFLESTIII  300
PSAPTTSSQR HKLYRDLQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0087s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371994.11e-169telomere repeat-binding factor 4
RefseqXP_024445699.11e-169telomere repeat-binding factor 4
TrEMBLB9N5F41e-167B9N5F4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07040.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-57MYB_related family protein