PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0087s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 370aa MW: 41498.1 Da PI: 8.3077 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.7 | 5.6e-25 | 76 | 119 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e SapurV1A.0087s0080.1.p 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 119 79***************************************997 PP | |||||||
2 | QLQ | 60 | 6.9e-21 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+ SapurV1A.0087s0080.1.p 10 PFTASQWQELEHQALIYKYMVSGIPIPPDLLLTIK 44 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.2E-12 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-15 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.957 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MIMSAGNRFP FTASQWQELE HQALIYKYMV SGIPIPPDLL LTIKRSACLD SSKLFPRQHP 60 HFAWSCFQMG SGRAMDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVEV 120 ATQTQSTTSP AVSSITRNHS NNSLLTASSL SLSFSLSPET HHQNRFHYPA GYHAHPNHPL 180 FSSSTPTGTG LSPQEDSTHL LLDSGGSSMT SNTDFRNRRN VYGLKEEVDE HAFFSEPSGS 240 MRSLSGSSLD DAWQLTPLTM NSSSSSSSNN SSKQRNLSSL QTEYSYLQLQ SLCDHDTPKQ 300 QKQLRHNCLL GNDGSNLGPM KMEKEEPQKT VHRFFDEWPP NIKESWLELD DKSSNSASVS 360 ALNIHSFII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0087s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 1e-168 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024445834.1 | 0.0 | growth-regulating factor 1 isoform X1 | ||||
TrEMBL | A0A2K1WWV8 | 0.0 | A0A2K1WWV8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-52 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0087s0080.1.p |