PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0087s0010.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YA | ||||||||
Protein Properties | Length: 257aa MW: 27801.2 Da PI: 9.007 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.1 | 5.2e-32 | 100 | 156 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p++VNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh hA++R RgsgGrF SapurV1A.0087s0010.3.p 100 DGPIFVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHAVNRVRGSGGRF 156 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.3E-35 | 98 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.105 | 99 | 159 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.1E-23 | 102 | 124 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.8E-27 | 102 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 104 | 124 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.1E-23 | 133 | 156 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSAVGGVNPQ DQNISSESDE NCGKGVKGKM KPVLMLSTPN SVSKHSQADC SYSMVLTPYA 60 DPYFGGLCNP YELHAFSHLG SHVVGMTAGR VPLPVDLADD GPIFVNAKQY HGILRRRQSR 120 AKLEAQNKLV KNRKPYLHES RHIHAVNRVR GSGGRFLSKK KLQQSDTTPG QCNVTDTIHS 180 HAKNDASELE SFQSGTDQSG ASNTTCTDIT GVSYSNFTLR QPDHLFSGIA AHLGGGMEIN 240 SRLMCRGNQH HTSVVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 102 | 161 | 4 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0087s0010.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213015 | 1e-145 | AC213015.1 Populus trichocarpa clone POP034-G19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003464.1 | 1e-166 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2 | ||||
TrEMBL | A0A2K1WWT4 | 1e-162 | A0A2K1WWT4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s07220.1 | 1e-165 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 8e-48 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0087s0010.3.p |