PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0087s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 280aa    MW: 31077.2 Da    PI: 9.2025
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0087s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.96e-32123179158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             d p++VNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  SapurV1A.0087s0010.2.p 123 DGPIFVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHAVNRVRGSGGRF 179
                             57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-35121182IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.105122182IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-27125179IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-23125147IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860127147IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-23156179IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRLNWLFTGN ITNQCQNFIL YEHIAKLSLT WNWLFFYVLD QDENCGKGVK GKMKPVLMLS  60
TPNSVSKHSQ ADCSYSMVLT PYADPYFGGL CNPYELHAFS HLGSHVVGMT AGRVPLPVDL  120
ADDGPIFVNA KQYHGILRRR QSRAKLEAQN KLVKNRKPYL HESRHIHAVN RVRGSGGRFL  180
SKKKLQQSDT TPGQCNVTDT IHSHAKNDAS ELESFQSGTD QSGASNTTCT DITGVSYSNF  240
TLRQPDHLFS GIAAHLGGGM EINSRLMCRG NQHHTSVVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21125184463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0087s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130151e-145AC213015.1 Populus trichocarpa clone POP034-G19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003464.11e-155PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A2K1WWT41e-152A0A2K1WWT4_POPTR; Uncharacterized protein
TrEMBLA0A2K1WWU91e-153A0A2K1WWU9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s07220.11e-155(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-47nuclear factor Y, subunit A3