PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0086s0550.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 375aa    MW: 41957.4 Da    PI: 4.5775
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0086s0550.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35441342101
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+ye++ed+++++++sws   nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgFkkv+ ++         weF+++ F  
  SapurV1A.0086s0550.3.p  44 FLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSNKFSTTLLPKHFKHSNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFLG 121
                             9********************999*****************************************999.........********** PP

                             XXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkk 101
                             g+k+ll++ikrk+
  SapurV1A.0086s0550.3.p 122 GQKHLLKTIKRKR 134
                             ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SuperFamilySSF467859.39E-3540133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5840133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.5E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEGVVVKEEE TVTYTGGGGS SSSSSCSLSP HPMEGLNEVG PPPFLTKTYE MVEDPSTDTV  60
VSWSGGRNSF IVWDSNKFST TLLPKHFKHS NFSSFIRQLN TYGFKKVDPD RWEFANEGFL  120
GGQKHLLKTI KRKRHLSQNT QQQGGGACIE LGQFEFEGEL ERLKRDRNVL MAEIVRLRQQ  180
QQQSREHIAA MEDRLESTER KQQRVMAFLA KALNNPSFIQ QFAQRAAQRR EIRGFENGRK  240
RRLTASPSVE NLQESVALGG SQFVDYTNQD LATMENEIET LFSATLDNES SSDIKDPIAS  300
SMHTSGGSNL DAVNETIWEE LFSDNLVSGD PNEVAGSDEP EVDVEVEDLV AKPVDWSDDF  360
QDLVDQMGYL RSNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243513317129Heat shock factor protein 1
5d5v_B2e-243513317129Heat shock factor protein 1
5d5v_D2e-243513317129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0086s0550.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139780.0KP013978.1 Populus simonii heat shock transcription factor A2 (HsfA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309492.20.0heat shock factor protein HSF30
SwissprotP411521e-143HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2I4KL080.0A0A2I4KL08_POPTR; HSF family protein
STRINGPOPTR_0006s24330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-118heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]