PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0086s0550.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 386aa MW: 43396.1 Da PI: 4.727 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.5 | 2.9e-35 | 44 | 134 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+ye++ed+++++++sws nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgFkkv+ ++ weF+++ F SapurV1A.0086s0550.1.p 44 FLTKTYEMVEDPSTDTVVSWSGGRNSFIVWDSNKFSTTLLPKHFKHSNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFLG 121 9********************999*****************************************999.........********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkk 101 g+k+ll++ikrk+ SapurV1A.0086s0550.1.p 122 GQKHLLKTIKRKR 134 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 26 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-38 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.79E-35 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.3E-58 | 40 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-30 | 44 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-18 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-18 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 83 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-18 | 95 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEGVVVKEEE TVTYTGGGGS SSSSSCSLSP HPMEGLNEVG PPPFLTKTYE MVEDPSTDTV 60 VSWSGGRNSF IVWDSNKFST TLLPKHFKHS NFSSFIRQLN TYGFKKVDPD RWEFANEGFL 120 GGQKHLLKTI KRKRHLSQNT QQQGGGACIE LGQFEFEGEL ERLKRDRNVL MAEIVRLRQQ 180 QQQSREHIAA MEDRLESTER KQQRVMAFLA KALNNPSFIQ QFAQRAAQRR EIRGFENGRK 240 RRLTASPSVE NLQESVALGG SQFVDYTNQD LATMENEIET LFSATLDNES SSDIKDPIAS 300 SMHTSGGSNL DAVNETIWEE LFSDNLVSGD PNEVAGSDEP EVDVEVEDLV AKPVDWSDDF 360 QDLVDQMGYL RQERPQQIFR KGVRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-24 | 42 | 133 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-24 | 35 | 133 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 35 | 133 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 35 | 133 | 17 | 129 | Heat shock factor protein 1 |
5hdg_A | 3e-24 | 42 | 133 | 8 | 110 | Heat shock factor protein 1 |
5hdn_A | 3e-24 | 42 | 133 | 8 | 110 | Heat shock factor protein 1 |
5hdn_B | 3e-24 | 42 | 133 | 8 | 110 | Heat shock factor protein 1 |
5hdn_C | 3e-24 | 42 | 133 | 8 | 110 | Heat shock factor protein 1 |
5hdn_D | 3e-24 | 42 | 133 | 8 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0086s0550.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013978 | 0.0 | KP013978.1 Populus simonii heat shock transcription factor A2 (HsfA2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309492.2 | 0.0 | heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-142 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A2I4KL08 | 0.0 | A0A2I4KL08_POPTR; HSF family protein | ||||
TrEMBL | A0A3N7F7V4 | 0.0 | A0A3N7F7V4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s24330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8225 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-117 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0086s0550.1.p |
Publications ? help Back to Top | |||
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