PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0086s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 536aa    MW: 58118.1 Da    PI: 8.7909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0086s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-0581101323
                             ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                             C++C+k F+r  nL+ H r H
  SapurV1A.0086s0480.1.p  81 CEICNKGFKRDQNLQLHRRGH 101
                             *******************88 PP
2zf-C2H212.40.00049155177123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k++  +s+ k H + +
  SapurV1A.0086s0480.1.p 155 WKCEKCSKRYAVQSDWKAHSKIC 177
                             58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-778101No hitNo description
SMARTSM003550.05179101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84579101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355100120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-5143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.15E-7150175No hitNo description
SMARTSM00355130155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MMKGLVMDEN MSNLTSASGE VSASSGSRIE TGAAKHPQHS FDSTNQPPPK KKKNLPGNPD  60
PDAEVIALSP NSLQTTNRFL CEICNKGFKR DQNLQLHRRG HNLPWKLKQR TNKEVRKKVY  120
VCPEVTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDW KAHSKICGTR  180
EYRCDCGTLF SRRDSFITHR AFCDTLAEES ARAMTVNPML SSQQPGSSAT HLMNLQALSV  240
KREQDQNQYL FNPRPDSIPP WLACSAIGEA AGPGPPQINL SSQLFPANLD QSFLHHGNPR  300
PNPTALPPFQ PSSTASPHMS ATALLQKAAQ MGVTASKPSP SPATAAMLRP HKGHHMSDQN  360
PACFSSTLPA TSTASSGMFF ASREEMGSGF DHGLASLDQN KATAVTSGIM EYLAASDHGG  420
GTSLVHDMMS SLSSASGFDG SSFDNEDFNG MLNPRRDGGS FQEILSRSTG PQFMRSDSAS  480
GSHHGGGNDG LTRDFLGLKA FPHKDFLNLP AGFDHIDPSA AYGQRNQNLP PPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34151212364Zinc finger protein JACKDAW
5b3h_F3e-34151212364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105117KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0086s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2317691e-106CU231769.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382013.10.0protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLU5G8R00.0U5G8R0_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-102indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]