PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0085s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 284aa    MW: 29058.9 Da    PI: 6.6872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0085s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05148169223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             +C+ Cg++F ++     H+r H
  SapurV1A.0085s0140.1.p 148 TCSTCGRTFASWKAVFGHMRAH 169
                             6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.995147169IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTNNMSNKDA AASLDKAEHS QAANSPGRNL NTEEEALASP PPRGSGLETG GPSAGSGPTR  60
PAGTEVGAPP TAVTFTGGAT PSTPVIIGGS GSGTVVATAV ADSIVAATGV TGEGSSSRKR  120
SGKGEEVSPL VSKKAKGEMD INPVAEPTCS TCGRTFASWK AVFGHMRAHP DRGWRGAFPP  180
PEWSPEKSGD RQGDHSALRG QLAPRLLNLA IETLDKMKQK QGHQAGPSGP SAKGRDFDLN  240
AEPPREPESN PGSPSPPSDD ESRFDLNKPP KPDRDNGNEG SSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0085s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306426.11e-122uncharacterized protein LOC7492122
TrEMBLB9H6611e-121B9H661_POPTR; Uncharacterized protein
STRINGPOPTR_0005s10330.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.15e-14C2H2 family protein