PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0085s0060.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Nin-like

Protein Properties

Length: 312aa MW: 35862.7 Da PI: 10.4019

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0085s0060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.2	7.8e-24	189	238	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i led+ k+F pi +A+++L+v+lTvLKr+CR++GI+RWP+Rkiksl SapurV1A.0085s0060.1.p 189 ARIALEDVVKHFGQPIVEASRNLKVGLTVLKRKCRELGIPRWPQRKIKSL 238 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.189	173	258	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-19	191	238	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MASSLIALLV FENNINKELV RSLHVYRFKD GKEKEVEREF VFSVDGPYVE MKAGPMLRLR 60 RFQVLELFEG QVIGLWRCIF AFHVNNPPHL SHSSFLLSVS RNPKLKSIPT LAKDIHFILK 120 LSCRTDNEEP SGFSSKGIRE KNLPALDQDL NCLPYSVSPS ELSKSKRIEL CAAGVMEKKK 180 KRAASEDIAR IALEDVVKHF GQPIVEASRN LKVGLTVLKR KCRELGIPRW PQRKIKSLDS 240 LIRSLQEEAE RHEQDKEDTT MAVAKRRRML ESEKETIEKK PFMEIQSETK RFRQDVFKKR 300 HRARALGNQG L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0085s0060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456810.1	0.0	protein RKD5 isoform X1
Swissprot	O81791	1e-89	RKD5_ARATH; Protein RKD5
TrEMBL	A0A2K2AEL0	0.0	A0A2K2AEL0_POPTR; Uncharacterized protein
STRING	POPTR_0005s10400.1	1e-169	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-88	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0085s0060.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]