PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0083s0520.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 410aa MW: 44780.2 Da PI: 6.8305 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.5 | 8.4e-37 | 35 | 150 | 2 | 100 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceae 76 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ + +++ SapurV1A.0083s0520.1.p 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELpawdpttagftpT-------TSK 114 79**************************************************************7766555544331.......222 PP TCP 77 sssssasnsssg...............kaaksaakskks 100 + + s+++ +++ k ++ ++ SapurV1A.0083s0520.1.p 115 ATRRSTQQLNISdeseyqlsienaaasK-TAA--AAIEA 150 2233333233332333344444443221.111..11111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-34 | 35 | 156 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.877 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MGESHHQAAT SSRLGIRNTV GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA SIDELAELPA WDPTTAGFTP TTSKATRRST 120 QQLNISDESE YQLSIENAAA SKTAAAAIEA QNMQQQMDEN PNCSSGFFPP SLDSDAIADT 180 IKTFFPMGAS TETSTPTIQF QNYPPDLLSR TSSQSQDLRL SLQSFQEPIL LQHQAHHQAQ 240 NEHQVFLSGA TAHYVGLDGS SGGWSDQHHT PDITRFQRNL VAWNTAGGGG GGGLFFNTPV 300 PPLQTMSPPV QPFFGQNQFF SQRGPLQSSN TPSVLAWIDP SITPDHHHHH HQQQIPQNHN 360 QQTAISGIGF TASGGEFYGF RVPARIQGEE EEHGGIHNKP SSASSDTRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0083s0520.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006370036.2 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-104 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2K2CA04 | 0.0 | A0A2K2CA04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s38480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 8e-83 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0083s0520.1.p |