PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0083s0320.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 367aa    MW: 40592.5 Da    PI: 7.237
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0083s0320.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.32e-0631742255
                            SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                            n  p +e    LA+k           +++ +qV +WFqNrR+  
  SapurV1A.0083s0320.2.p 31 NTMPAREVLVSLADKFsesperkgkiQVQMKQVWNWFQNRRYAI 74
                            666777777777777777777777779**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-51382IPR009057Homeodomain-like
SuperFamilySSF466899.41E-91379IPR009057Homeodomain-like
PROSITE profilePS500719.0861377IPR001356Homeobox domain
CDDcd000860.006952475No hitNo description
PfamPF167194.2E-41134261IPR032001SAWADEE domain
CDDcd000240.00537148180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFMQYEVT EMDAILQEYH NTMPAREVLV SLADKFSESP ERKGKIQVQM  60
KQVWNWFQNR RYAIRAKSNK APMKLNITPM PRDDSAVARS VPQQVASPIP DAVPATTSAS  120
SAAGAGRTTS ENSYMEFESK SARDGAWYDV GTFLSHRYLD KGDPEVLVRF AGFGPDEDEW  180
LNVCKHVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC  240
RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAANDSA ATDQQKTRVD TSKVNTPRVA  300
VSATETMQHN TGVADPISQA NVSQPAKTIN EAETLSAANP GNPSLISTAV FPTVTASGPG  360
EKHVGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-451352654134SHH1 SAWADEE
4iur_B1e-451352654134SHH1 SAWADEE
4iut_A1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-451352654134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0083s0320.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038896.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-149SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K2C9W20.0A0A2K2C9W2_POPTR; Uncharacterized protein
STRINGEOY131340.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-132sequence-specific DNA binding transcription factors;sequence-specific DNA binding