PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0083s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 390aa    MW: 43191.7 Da    PI: 6.895
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0083s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.73.1e-0657972555
                            --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                            p +e    LA+k           +++ +qV +WFqNrR+  
  SapurV1A.0083s0320.1.p 57 PAREVLVSLADKFsesperkgkiQVQMKQVWNWFQNRRYAI 97
                            5555555555555555555555599*************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.66542100IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-543105IPR009057Homeodomain-like
SuperFamilySSF466892.78E-844102IPR009057Homeodomain-like
CDDcd000860.005754798No hitNo description
PfamPF167194.7E-41157284IPR032001SAWADEE domain
CDDcd000240.00585171203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSGLFFHVIF LRIWGGCKED RLIPPAPSPG LLFFHLVDES NVTEMDAILQ EYHNTMPARE  60
VLVSLADKFS ESPERKGKIQ VQMKQVWNWF QNRRYAIRAK SNKAPMKLNI TPMPRDDSAV  120
ARSVPQQVAS PIPDAVPATT SASSAAGAGR TTSENSYMEF ESKSARDGAW YDVGTFLSHR  180
YLDKGDPEVL VRFAGFGPDE DEWLNVCKHV RQRSLPCEAS ECVAVLPGDL ILCFQEGKDQ  240
ALYFDAHVLD AQRRRHDVRG CRCRFLVRYD HDQSEEIVPL RKICRRPETD YRLLQLHAAN  300
DSAATDQQKT RVDTSKVNTP RVAVSATETM QHNTGVADPI SQANVSQPAK TINEAETLSA  360
ANPGNPSLIS TAVFPTVTAS GPGEKHVGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-451582884134SHH1 SAWADEE
4iur_B3e-451582884134SHH1 SAWADEE
4iut_A3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-451582884134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0083s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038896.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-136SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K2C9W20.0A0A2K2C9W2_POPTR; Uncharacterized protein
STRINGcassava4.1_011330m1e-177(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-119sequence-specific DNA binding transcription factors;sequence-specific DNA binding