PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0083s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92699.7 Da    PI: 6.3122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0083s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181674357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0083s0250.1.p 16 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                            6789*****************************************************97 PP
2START1762.3e-551653722204
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g
  SapurV1A.0083s0250.1.p 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDILSVIPTG 250
                             68999*****************************************************.8888888888****************** PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S+++ +  p+   s+s+vRae+lpSg+li+p+++ +s +++v+h
  SapurV1A.0083s0250.1.p 251 ngGTIELIYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVICERSLTNSTGGPTgppSASFVRAEMLPSGYLIRPCEGSGSIIHIVDH 337
                             ************************************************99999999******************************* PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                             vdl+ ++++++lr+l++s+ + ++k+++a+l++ +
  SapurV1A.0083s0250.1.p 338 VDLDVWSVPEVLRPLYESSKILAQKMTMAALRHMR 372
                             *******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5481175IPR001356Homeobox domain
SMARTSM003897.1E-151379IPR001356Homeobox domain
SuperFamilySSF466892.78E-161678IPR009057Homeodomain-like
CDDcd000864.04E-161676No hitNo description
PfamPF000465.6E-161674IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-181874IPR009057Homeodomain-like
CDDcd146862.37E-668107No hitNo description
PROSITE profilePS5084825.584155383IPR002913START domain
CDDcd088751.09E-72159375No hitNo description
Gene3DG3DSA:3.30.530.201.5E-23163371IPR023393START-like domain
SMARTSM002343.7E-52164374IPR002913START domain
SuperFamilySSF559611.51E-38165376No hitNo description
PfamPF018521.6E-52165373IPR002913START domain
SuperFamilySSF559617.69E-6411497No hitNo description
SuperFamilySSF559617.69E-6525599No hitNo description
PfamPF086701.4E-51699843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MALSIHSKDK HMDSSKYVRY TPEQVEALER VYTECPKPSS LRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND RLQKQVSHLV YENGFMRQQI  120
QTASATTTDN SCESVVMSGQ HQQQQNATPQ QPQRDANNPA GLLAIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PTKVAEILKD RPSWFRDCRC  240
LDILSVIPTG NGGTIELIYM QTYAPTTLAA ARDFWTLRYT TTLEDGSLVI CERSLTNSTG  300
GPTGPPSASF VRAEMLPSGY LIRPCEGSGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA  360
QKMTMAALRH MRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FTDDGWSLLG  420
SDGGDDVTIA INSSPNKFLG SQYNASMFPT FGGGVLCAKA SMLLQNVPPA LLVRFLREHR  480
SEWADYGVDA YSAACLKASP YAVPCARPGG LPSSQVILPL AHTMEHEEFL EVVRLEGHAF  540
SPEDVALTRD MYLLQLCSGV DENAVGACAQ LVFAPIDESF ADDAPLLSSG FRVIPLDPKT  600
DAPATTRTLD LASTLEVGPG GTRPASEADT NSYNLRSVLT IAFQFSFENH MRDNVAAMAR  660
QYVRGVVGSV QRVAMAIAPS RLSSNVGPKT LPGSPEALTL AQWICRSYRI HTGGELFRVE  720
SQAGDALLKQ LWHHSDAIMC CSLKTNASPV FTFANQAGLD MLETTLVALQ DIMLDKILDE  780
AGRKILCSEF SKITQQGYAY LPSGICVSSM GRPVSYEQAV AWKVLNDDDS NHCLAFMFMN  840
WSFM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0083s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196190.0AY919619.1 Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298892.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ5D1M30.0Q5D1M3_POPTR; Class III HD-Zip protein 4
STRINGPOPTR_0001s38120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]