PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0082s0290.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-X1
Protein Properties Length: 1095aa    MW: 118370 Da    PI: 7.732
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0082s0290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.64e-06493511119
                zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                             CG+H+C++lCH G CppC 
  SapurV1A.0082s0290.1.p 493 CGQHSCESLCHSGHCPPCL 511
                             ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.53E-6108179No hitNo description
PROSITE profilePS500168.787116177IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.376119175IPR001841Zinc finger, RING-type
PROSITE patternPS013590119174IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.039231249IPR000967Zinc finger, NF-X1-type
PfamPF014221.8233248IPR000967Zinc finger, NF-X1-type
CDDcd060081.07E-11265313No hitNo description
SMARTSM004380.012275294IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033277292IPR000967Zinc finger, NF-X1-type
CDDcd060086.42E-9329372No hitNo description
PfamPF014220.04339356IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029339358IPR000967Zinc finger, NF-X1-type
CDDcd060084.22E-13387435No hitNo description
PfamPF014220.16391414IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012397416IPR000967Zinc finger, NF-X1-type
PfamPF0142218455466IPR000967Zinc finger, NF-X1-type
SMARTSM00438170455489IPR000967Zinc finger, NF-X1-type
CDDcd060085.16E-9483526No hitNo description
PfamPF014229.7E-5493510IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4493512IPR000967Zinc finger, NF-X1-type
CDDcd060081.52E-5540588No hitNo description
PfamPF014222.3550567IPR000967Zinc finger, NF-X1-type
SMARTSM004380.017550568IPR000967Zinc finger, NF-X1-type
PfamPF014220.23603618IPR000967Zinc finger, NF-X1-type
SMARTSM004383.6603633IPR000967Zinc finger, NF-X1-type
CDDcd060082.98E-5631680No hitNo description
PfamPF0142291635657IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1642663IPR000967Zinc finger, NF-X1-type
PfamPF014244.5E-5773838IPR001374R3H domain
Gene3DG3DSA:3.30.70.3308.2E-5884930IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1095 aa     Download sequence    Send to blast
MSFQSRNDGG DNNNGSRCRF PTRQTWVPRG SNSSPPVNMN VNPNPPLSFS SRNNGIGGHS  60
SHGTGVAEYR SKGGVNAHRG GQMGRGKERA METREVKDPS LPQLAQEIQE KLVKSTVECM  120
ICYDMVRRSA PIWSCSSCFS IFHLNCIKKW ARTPTSVDLI TEKNQGFNWR CPGCQSVQLT  180
SLKDIRYACF CGKRTDPPSD LYLTPHSCGE PCGKQLEKEV PGADGSKKDL CPHNCVLQCH  240
PGPCPPCKAF ARPSPCADRK SVLTCGQRCD KLLECWRHRC EQICHVGPCN PCQVMVNASC  300
FCKKNTEAVL CGDMAVKGEV KAEDGVFSCN STCGKVLGCG NHICGESCHP GDCGDCEFMP  360
GRVESCYCGK TSLQEERNSC LDPIPTCEQI CGKSLPCRIH QCKEVCHSGG CSPCLVSVTQ  420
KCRCGSTSRT VECYKTTSEN ENFLCDKPCG RKKNCGRHRC SERCCPLSNS NNQFSGDWDP  480
HFCQMACGKK LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPPPSC  540
QLPCSVPQPC GHTASHSCHF GDCPPCSVPV AKECVGGHVI LGNIPCGSKD IKCNKLCGKT  600
RQCGLHACGR TCHSPPCDTS PVTESGSRAS CGQTCGAPRR DCRHTCTALC HPYAACPDVR  660
CEYPVTITCS CGRMTASVPC DAGWSNGGYN DNILEASILH KLPAPLQPVE ASGKKIPLGQ  720
RKLMCDDECA KFERKRVLAD AFDINPPNLE ALHFGEDSSV TELIGDLYRR DPKWVLAVED  780
RCKYLVLSKS RGTTTGFKIH VFCPMLKDKR DAVRLIAERW KLTIYSAGWE PKRFIIIHAT  840
PKSKPPSRVI GIKGTTTLST SHPPVFDALV DMDPRIVVSF LDLPREADIS SLVLRFGGEC  900
ELVWLNDKNA LAVFNDPARA ATAMRRLDHG SVYYGAAVVP QNSGASLGSP ATNAWGMVGT  960
AMEGTITALK GTSWKKAVAQ ESGWREDSWG DEELSGGGSA DAQASAWKGK EPPISTSINR  1020
WSVLDSDKAD SSSAASIRID DPTKRAAGIL SSSGLESNAS TSNISVQTAV QPGGVSSEED  1080
LSEVVVDDWE KAYD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0082s0290.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2168360.0AC216836.1 Populus trichocarpa clone POP013-I22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317701.20.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2K1Y8R80.0A0A2K1Y8R8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s04070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1