PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0080s0360.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 337aa MW: 38332.8 Da PI: 9.0186 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 178 | 197 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ SapurV1A.0080s0360.1.p 178 FACSICSKTFNRYNNMQMHM 197 78*****************9 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 262 | 284 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F k + ++H +++ SapurV1A.0080s0360.1.p 262 FMCRKCSKTFAVKGDWRTHEKNC 284 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.35E-5 | 174 | 201 | No hit | No description |
Pfam | PF13912 | 2.4E-4 | 178 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.45 | 178 | 205 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 178 | 200 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 178 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 180 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 225 | 257 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.0E-5 | 248 | 282 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.01E-6 | 248 | 282 | No hit | No description |
SMART | SM00355 | 53 | 262 | 282 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGLWNNHVED KNLCFQAPNF IEWLKPSSFP SPSPSPSSSS LSNSSVSQQV QLTNPMSALR 60 PPTLFPQQQQ QQQRRESMKE TIQCLPLLSR LTEKRTLKDI EEDMGVKERS VGIKEEKVTV 120 ALHIGLPNNG DSEAVTEVFD LMKEDISTKK IFQRCSFNTE SRFWIPTPAQ ILVGPMQFAC 180 SICSKTFNRY NNMQMHMWGH GSEFRKGPDS LKGTQPAAML RLPCYCCAQG CKNNINHPRA 240 KPLKDFRTLQ THYKRKHGAK PFMCRKCSKT FAVKGDWRTH EKNCGKLWYC TCGSDFKHKR 300 SLKDHIRSFG KGHSPHPSLE GFEDIEKECI TGSEDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0080s0360.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB053190 | 1e-108 | AB053190.1 Salix reinii DNA, microsatellite marker Sare09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002305556.1 | 0.0 | zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 1e-127 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | B9H1R3 | 0.0 | B9H1R3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s19460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-123 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0080s0360.1.p |
Publications ? help Back to Top | |||
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