PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0079s0410.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 382aa MW: 41748 Da PI: 7.0975

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0079s0410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.3e-31	216	271	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+ F++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ SapurV1A.0079s0410.1.p 216 KQRRCWSTELHRTFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 271 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-28	213	274	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.581	213	273	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-18	214	274	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-26	216	271	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-7	218	269	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0055062	Biological Process	phosphate ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDFAEKIQRC REHLEALEEE RRKIQVFERE LPLCLELVTQ AIEAGKRELS GTTTEDNMHG 60 ESDFSEQTSS GGPLLEEFIP IKRTRSYDGN DDYQEQHSQN NSERNKTSIS SSSNDHNKKS 120 DWLRSVQLWN LFPDPPQKQD LPRKAAVTEV KRNGAGCAFQ PFHREKSAGK TSNQAIAKAP 180 TSVPASKTCS TAVVASGGLD GGSNKKEDQD GGNQRKQRRC WSTELHRTFL HALQQLGGSH 240 AATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSPTIH NNSNQQAPQI VVVGGIWVPP 300 PEYAAVAATA ASTETSPFSA ANGINAPIAA AATTFPQKPH HVQSETLQSE GRDGHCEGGA 360 HSDDSPATSS STHTTTTSPV F*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDFAEKIQRC REHLEALEEE RRKIQVFERE LPLCLELVTQ AIEAGKRELS GTTTEDNMHG  60
ESDFSEQTSS GGPLLEEFIP IKRTRSYDGN DDYQEQHSQN NSERNKTSIS SSSNDHNKKS  120
DWLRSVQLWN LFPDPPQKQD LPRKAAVTEV KRNGAGCAFQ PFHREKSAGK TSNQAIAKAP  180
TSVPASKTCS TAVVASGGLD GGSNKKEDQD GGNQRKQRRC WSTELHRTFL HALQQLGGSH  240
AATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSPTIH NNSNQQAPQI VVVGGIWVPP  300
PEYAAVAATA ASTETSPFSA ANGINAPIAA AATTFPQKPH HVQSETLQSE GRDGHCEGGA  360
HSDDSPATSS STHTTTTSPV F*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269\|PubMed:27016098}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00218	DAP	Transfer from AT1G68670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0079s0410.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269\|PubMed:27016098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462049.1	0.0	transcription factor HHO2
Swissprot	Q8VZS3	2e-96	HHO2_ARATH; Transcription factor HHO2
TrEMBL	A0A2I4KKV8	0.0	A0A2I4KKV8_POPTR; G2-like family protein
STRING	POPTR_0008s11630.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	3e-73	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0079s0410.1.p

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098] Sun X, et al. The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides. J. Exp. Bot., 2018. 69(7): p. 1749-1764 [PMID:29385617]