PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0079s0330.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bZIP

Protein Properties

Length: 445aa MW: 49136.9 Da PI: 6.5111

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0079s0330.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.4e-10	157	199	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k rr+++NReAAr+sR+RKka++++Le+ L++ ++L+ SapurV1A.0079s0330.3.p 157 RKTLRRLAQNREAARKSRLRKKAYVQQLENSRHRLTQLEQELQ 199 6889*************************99888887776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-7	153	201	No hit	No description
SMART	SM00338	5.2E-8	154	225	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	156	200	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-7	157	199	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.12E-23	158	210	No hit	No description
SuperFamily	SSF57959	4.9E-7	158	202	No hit	No description
PROSITE pattern	PS00036	0	161	176	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-32	243	316	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MYCHSSFLLR GEDISSRNQT RFADLGELHQ PAPVFPHDDA VDLSSSSMFS LKSGNATAVS 60 HNLSYATALN TSIVPVEIAT TGAGCLDTGQ YMYQKGTGFG SSLGNGQSIE TWGDSGMAEN 120 SQQTDTSTDV DADDKNQHGT AVVVESVDQS KGKTGDRKTL RRLAQNREAA RKSRLRKKAY 180 VQQLENSRHR LTQLEQELQR ARQQGFFIAS GFSGDHGHSI TGNEAFAFDL DYSRWLDEHH 240 RLINDLRTAM NSHMSDDELR LLVDGVMAHY DEIFRLKSNG AKADVFHMLS GMWKTPAERC 300 FMWLGGFRSS ELLKILGNHL EPLTDQQLMG ICNLQQSSQQ AEDALSQGME ALQQSLVDTL 360 SSTSLGPAGS GNVADYMGQM AIAMGKLATL ENFLHQADLL RQQTLQQMHR ILTTRQAARA 420 LLVVSDYTSR LRALSSLWLA RPRD*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MYCHSSFLLR GEDISSRNQT RFADLGELHQ PAPVFPHDDA VDLSSSSMFS LKSGNATAVS  60
HNLSYATALN TSIVPVEIAT TGAGCLDTGQ YMYQKGTGFG SSLGNGQSIE TWGDSGMAEN  120
SQQTDTSTDV DADDKNQHGT AVVVESVDQS KGKTGDRKTL RRLAQNREAA RKSRLRKKAY  180
VQQLENSRHR LTQLEQELQR ARQQGFFIAS GFSGDHGHSI TGNEAFAFDL DYSRWLDEHH  240
RLINDLRTAM NSHMSDDELR LLVDGVMAHY DEIFRLKSNG AKADVFHMLS GMWKTPAERC  300
FMWLGGFRSS ELLKILGNHL EPLTDQQLMG ICNLQQSSQQ AEDALSQGME ALQQSLVDTL  360
SSTSLGPAGS GNVADYMGQM AIAMGKLATL ENFLHQADLL RQQTLQQMHR ILTTRQAARA  420
LLVVSDYTSR LRALSSLWLA RPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0079s0330.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002311449.2	0.0	transcription factor TGA2.2 isoform X1
Swissprot	Q9SX27	1e-177	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A1L6K4R4	0.0	A0A1L6K4R4_POPTO; Erianthia family protein
STRING	POPTR_0008s11710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-154	bZIP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0079s0330.3.p

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]