PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0079s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 438aa    MW: 48595.7 Da    PI: 5.0741
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0079s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12.1e-091659340
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  SapurV1A.0079s0160.1.p 16 ARACDGCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                            578*****************************667888889877 PP
2CCT67.34e-23389431143
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                             Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
  SapurV1A.0079s0160.1.p 389 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 431
                             9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7221461IPR000315B-box-type zinc finger
SMARTSM003361.3E-101461IPR000315B-box-type zinc finger
PfamPF006432.9E-71660IPR000315B-box-type zinc finger
CDDcd000218.96E-101761No hitNo description
PROSITE profilePS5101716.083389431IPR010402CCT domain
PfamPF062031.3E-17389431IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MICNKSLANA VGGKTARACD GCIKKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
IKIASLQSLE LCSKEDSVPS WHGGFTRKAR TPRHGKPVSQ SRIEETTRSI PIPLVPEVGS  120
DETSHEDNVE DHLLLYRVPI FDPVVADLCT STTISNEAGA IVPAGGDGDA DQRVADSNGI  180
ESKISIGAIE RKDVESLPGF LPSDMDLAEF AADMESLLGR GLENESFGME ELGLMDCNEE  240
KELEVKGFPL GNGNVKDAGV EKTYFRECRA DIEIDMAKDP IFELSFDYDS PATCGEEDEK  300
VGIEEEELKN NRGEYEDNDG AKRKILLSLD YEAVRTAWAS QGSPWTNGKR PDFDPDECWP  360
DCMGICVTQS YGDMMSGLGL HPAMVDRGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK  420
RPRMKGRFVK RIALAGK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399415RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0079s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470810.0EF147081.1 Populus trichocarpa clone WS01227_E03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311458.20.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA9PFG30.0A9PFG3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-98B-box type zinc finger protein with CCT domain