PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0078s0420.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 439aa    MW: 48184 Da    PI: 4.9023
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0078s0420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.7e-091659340
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            +r C+ + +k+++++C  ++ +lC+ C ++ H        H++v
  SapurV1A.0078s0420.1.p 16 ARACDSCIKKRARWYCAADDAFLCQACDSSVHTAnslarrHERV 59
                            578*****************************556777778876 PP
2CCT67.53.5e-23390433144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  SapurV1A.0078s0420.1.p 390 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 433
                             9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0071461IPR000315B-box-type zinc finger
PfamPF006432.9E-71659IPR000315B-box-type zinc finger
CDDcd000215.47E-101761No hitNo description
PROSITE profilePS5101716.083390432IPR010402CCT domain
PfamPF062035.9E-18390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MICSKSLANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSSVHTAN SLARRHERVR  60
LKSASFKDEG SKETSMPSWH GGFTRKARTP RHGKPVSQSK IEGTIRNIPL VPEVGSDEIS  120
LEDNEEEHLL YRVPIFEPFA AELCTSTTIS DEAGVGVPAG GDDTDQRVAD SSGIESKVLL  180
GGSEGKDAES LHGFLPSDMD LAEFAADMES LLGRGLENES FGMEELGLMD CKEENVLEVK  240
GYPLGNGKVK VEEEEDAGME EKDVRECHAD IEIDMAKDPP FELSFDFDSP ATCGEECEKV  300
EGVLLKNSDG EYDDYGGAKK KTKTLLSLDY EAVMAAWASQ GSPWTNGYRP DFDPDECWPD  360
CMGISGTQLH HPFGDMSGSG AHPALVDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE  420
KRPRMKGRFV KRTAIAAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400416RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0078s0420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4772940.0KC477294.1 Populus tomentosa COL6-2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315940.20.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A2K1YT280.0A0A2K1YT28_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-104B-box type zinc finger protein with CCT domain