PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0076s0230.7.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 542aa    MW: 59437.4 Da    PI: 7.127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0076s0230.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.39.9e-17340386455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  SapurV1A.0076s0230.7.p 340 VHNLSERRRRDRINEKMRALQELIPHC-----YKTDKASMLDEAIEYLKSLQ 386
                             6*************************9.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-20334398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.51E-18339390No hitNo description
PfamPF000104.8E-14340386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-20340394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MNHCIPDWSF EGGLPVSNQK QPIEPNNDLV ELLWRNGQVV LHSQALRKPN PHVQKHDSPT  60
VKDSGSILNS SHLIQDDETV SWIQYPLEDS FEKEFCSNFF SELPPPLSDQ ILEEKSAKFD  120
ASAPSQQQHQ HQHLLQLNNS KLPVVSEFSG NQMPPPRTQV LEKNHTGVGG FGKAVNANFS  180
QFSAPFKGGD FRTSSRQFGG QGSGNSPQGE VRECSVVTVG SSNQIPHDRD MSRASSNAIG  240
TSTGFSTGPS MDDPRKIVSQ SERGKTETLE AALTSSSGGS GSSFGRTCKQ SAGPSSSQKR  300
KTIDTGDSEY QSEDAELDSM AGNNPAKRSG STRRSRAAEV HNLSERRRRD RINEKMRALQ  360
ELIPHCYKTD KASMLDEAIE YLKSLQLQLQ VMWMGSGMAP MVFPGVQHFM SRMGMGMAPP  420
LPSMQNPMHL PRVPLIDQSI PIAPSQNQGV MCQTPVLNPV NFQNQMQNPA FVNQYARYMG  480
FPMQPAFQPM NMFRFGSQTG QQDQMVAPTS SGGRPLSAGS AVSDAPLSGK IDEEFHRHHP  540
V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344349ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0076s0230.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032742.10.0PREDICTED: transcription factor PIF4-like isoform X2
TrEMBLB9GSQ90.0B9GSQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s22870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.15e-53phytochrome interacting factor 3-like 6