PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0076s0230.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 542aa MW: 59437.4 Da PI: 7.127 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.3 | 9.9e-17 | 340 | 386 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq SapurV1A.0076s0230.6.p 340 VHNLSERRRRDRINEKMRALQELIPHC-----YKTDKASMLDEAIEYLKSLQ 386 6*************************9.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-20 | 334 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.146 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.51E-18 | 339 | 390 | No hit | No description |
Pfam | PF00010 | 4.8E-14 | 340 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.2E-20 | 340 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-18 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MNHCIPDWSF EGGLPVSNQK QPIEPNNDLV ELLWRNGQVV LHSQALRKPN PHVQKHDSPT 60 VKDSGSILNS SHLIQDDETV SWIQYPLEDS FEKEFCSNFF SELPPPLSDQ ILEEKSAKFD 120 ASAPSQQQHQ HQHLLQLNNS KLPVVSEFSG NQMPPPRTQV LEKNHTGVGG FGKAVNANFS 180 QFSAPFKGGD FRTSSRQFGG QGSGNSPQGE VRECSVVTVG SSNQIPHDRD MSRASSNAIG 240 TSTGFSTGPS MDDPRKIVSQ SERGKTETLE AALTSSSGGS GSSFGRTCKQ SAGPSSSQKR 300 KTIDTGDSEY QSEDAELDSM AGNNPAKRSG STRRSRAAEV HNLSERRRRD RINEKMRALQ 360 ELIPHCYKTD KASMLDEAIE YLKSLQLQLQ VMWMGSGMAP MVFPGVQHFM SRMGMGMAPP 420 LPSMQNPMHL PRVPLIDQSI PIAPSQNQGV MCQTPVLNPV NFQNQMQNPA FVNQYARYMG 480 FPMQPAFQPM NMFRFGSQTG QQDQMVAPTS SGGRPLSAGS AVSDAPLSGK IDEEFHRHHP 540 V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 344 | 349 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0076s0230.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032742.1 | 0.0 | PREDICTED: transcription factor PIF4-like isoform X2 | ||||
TrEMBL | B9GSQ9 | 0.0 | B9GSQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s22870.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.1 | 5e-53 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0076s0230.6.p |