PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0074s0340.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

BBR-BPC

Protein Properties

Length: 289aa MW: 31981.7 Da PI: 9.5508

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0074s0340.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	319.7	9.2e-98	5	288	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd.........maflqrdkalaernkalve 76 md+d+s + rn+gyyep+ +k nlglqlmss e+ + + +++ ++ +++rd m++ rd ++ + SapurV1A.0074s0340.2.p 5 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLMSSTMpEKPILGSRSAAIMTSVNGGFHHRDigisqpfmpMEY-TRDVWIGQ------- 82 99*************9.99*****9865266655555555588999***999999999999.89999999....... PP GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 ++k+l++l+ ++ + vl++t+s +++++ + +++ + + e l +++eea ++k + +k+rqr+k pk+++ SapurV1A.0074s0340.2.p 83 -REKFLNVLPGNHD-------YAAVLPETSSSHHMEMFQ------QPYST-KDEPL--EQVEEAGVVEKVNGPSKTRQRHKGPKSPR 152 .789**8775.......78899****99933......33332.22222..2344556666667778889999*** PP GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250 akk k+ +++k + +++ +r+ a kk+ ++v+ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt iSv+PLP+stkr SapurV1A.0074s0340.2.p 153 AKKGKRDAQVPKPEGSPSI--QRAGAAKKTAEIVINGINMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCISVHPLPMSTKR 237 *98888866665555..799*********************************************************** PP GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rgaRiagrKmS gafkk+LekLa+eGyd+s p+DL++hWAkHGtnkfvtir SapurV1A.0074s0340.2.p 238 RGARIAGRKMSLGAFKKVLEKLAGEGYDFSDPIDLRTHWAKHGTNKFVTIR 288 ************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.4E-110	5	288	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	4.6E-189	5	288	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MFEIMDEDNS LNIRNWGYYE PTPVKGNLGL QLMSSTMPEK PILGSRSAAI MTSVNGGFHH 60 RDIGISQPFM PMEYTRDVWI GQREKFLNVL PGNHDYAAVL PETSSSHHME MFQQPYSTKD 120 EPLEQVEEAG VVEKVNGPSK TRQRHKGPKS PRAKKGKRDA QVPKPEGSPS IQRAGAAKKT 180 AEIVINGINM DISVIPIPVC SCTGNPQQCY RWGCGGWQSA CCTTCISVHP LPMSTKRRGA 240 RIAGRKMSLG AFKKVLEKLA GEGYDFSDPI DLRTHWAKHG TNKFVTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0074s0340.2.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982266	0.0	FJ982266.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC8) gene, complete cds.
GenBank	FJ982267	0.0	FJ982267.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374225.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_006374226.1	0.0	protein BASIC PENTACYSTEINE2
Swissprot	Q9LDE2	7e-89	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	U5FRS0	0.0	U5FRS0_POPTR; Uncharacterized protein
STRING	POPTR_0015s05200.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-91	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0074s0340.2.p

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]