PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0074s0330.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 288aa MW: 31876.8 Da PI: 10.3076 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 321.4 | 2.8e-98 | 1 | 287 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd.........maflqrdkalaernkalve 76 md+d+s + rn+gyyep+ +k nlglqlmss e+ + + +++ ++ ++++d m++ +r +++ + SapurV1A.0074s0330.2.p 1 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLMSSTMpEKSFLGSRSAAIMTSMNGGFNHKDvgvsqpmhpMEY-MRGAWIGQ------- 78 99***************9.99*********986636665555555558889999*****666666666666.55666665....... PP GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 ++k++++l+ +++ + v ++t+s++++q ++++ +++e + +eea ++k + +kkrqr+k pk++k SapurV1A.0074s0330.2.p 79 -REKFINVLPGNHN-------YAAVFPETSSAHHMQV------FQPPYSTKDEPL---ELVEEAGVVEKVNGPNKKRQRQKAPKSPK 148 .899******8886.......78899*******9999......333444322221...22223333333344445555566666666 PP GAGA_bind 164 akkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 + k+kk +++++ + + + + +r+++ kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt +SvyPLP+s k SapurV1A.0074s0330.2.p 149 SPKAKKGKRAPQVPKPEGTLSaQRVRSAKKTAEIMINGIHMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCLSVYPLPMSMK 235 655555555554444444444489*************************************************************** PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rrgaRiagrKmS gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir SapurV1A.0074s0330.2.p 236 RRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNPIDLRTHWAKHGTNKFVTIR 287 ***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.1E-188 | 1 | 287 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.1E-111 | 1 | 287 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDEDNSLNIR NWGYYEPTPV KGNLGLQLMS STMPEKSFLG SRSAAIMTSM NGGFNHKDVG 60 VSQPMHPMEY MRGAWIGQRE KFINVLPGNH NYAAVFPETS SAHHMQVFQP PYSTKDEPLE 120 LVEEAGVVEK VNGPNKKRQR QKAPKSPKSP KAKKGKRAPQ VPKPEGTLSA QRVRSAKKTA 180 EIMINGIHMD ISVIPIPVCS CTGNPQQCYR WGCGGWQSAC CTTCLSVYPL PMSMKRRGAR 240 IAGRKMSLGA FKKVLEKLAG EGYDFSNPID LRTHWAKHGT NKFVTIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0074s0330.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ982268 | 0.0 | FJ982268.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) gene, complete cds. | |||
GenBank | FJ982269 | 0.0 | FJ982269.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441848.1 | 0.0 | protein BASIC PENTACYSTEINE2 | ||||
Refseq | XP_024441849.1 | 0.0 | protein BASIC PENTACYSTEINE2 | ||||
Swissprot | Q9LDE2 | 1e-88 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | H1ZN52 | 0.0 | H1ZN52_POPTR; BBR-BPC family protein | ||||
STRING | POPTR_0015s05200.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-89 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0074s0330.2.p |
Publications ? help Back to Top | |||
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