PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0074s0330.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

BBR-BPC

Protein Properties

Length: 288aa MW: 31876.8 Da PI: 10.3076

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0074s0330.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	321.4	2.8e-98	1	287	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd.........maflqrdkalaernkalve 76 md+d+s + rn+gyyep+ +k nlglqlmss e+ + + +++ ++ ++++d m++ +r +++ + SapurV1A.0074s0330.1.p 1 MDEDNSLNiRNWGYYEPT-PVKGNLGLQLMSSTMpEKSFLGSRSAAIMTSMNGGFNHKDvgvsqpmhpMEY-MRGAWIGQ------- 78 99*************9.99*****986636665555555558889999*666666666666.55666665....... PP GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 ++k++++l+ +++ + v ++t+s++++q ++++ +++e + +eea ++k + +kkrqr+k pk++k SapurV1A.0074s0330.1.p 79 -REKFINVLPGNHN-------YAAVFPETSSAHHMQV------FQPPYSTKDEPL---ELVEEAGVVEKVNGPNKKRQRQKAPKSPK 148 .899**8886.......78899***9999......333444322221...22223333333344445555566666666 PP GAGA_bind 164 akkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 + k+kk +++++ + + + + +r+++ kk+ ++ +ng+++D+s +P+PvCsCtG ++qCY+WG+GGWqSaCCtt +SvyPLP+s k SapurV1A.0074s0330.1.p 149 SPKAKKGKRAPQVPKPEGTLSaQRVRSAKKTAEIMINGIHMDISVIPIPVCSCTGNPQQCYRWGCGGWQSACCTTCLSVYPLPMSMK 235 655555555554444444444489*********************************************************** PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rrgaRiagrKmS gafkk+LekLa+eGyd+snp+DL++hWAkHGtnkfvtir SapurV1A.0074s0330.1.p 236 RRGARIAGRKMSLGAFKKVLEKLAGEGYDFSNPIDLRTHWAKHGTNKFVTIR 287 *************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.1E-188	1	287	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-111	1	287	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDEDNSLNIR NWGYYEPTPV KGNLGLQLMS STMPEKSFLG SRSAAIMTSM NGGFNHKDVG 60 VSQPMHPMEY MRGAWIGQRE KFINVLPGNH NYAAVFPETS SAHHMQVFQP PYSTKDEPLE 120 LVEEAGVVEK VNGPNKKRQR QKAPKSPKSP KAKKGKRAPQ VPKPEGTLSA QRVRSAKKTA 180 EIMINGIHMD ISVIPIPVCS CTGNPQQCYR WGCGGWQSAC CTTCLSVYPL PMSMKRRGAR 240 IAGRKMSLGA FKKVLEKLAG EGYDFSNPID LRTHWAKHGT NKFVTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0074s0330.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982268	0.0	FJ982268.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) gene, complete cds.
GenBank	FJ982269	0.0	FJ982269.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024441848.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_024441849.1	0.0	protein BASIC PENTACYSTEINE2
Swissprot	Q9LDE2	1e-88	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	H1ZN52	0.0	H1ZN52_POPTR; BBR-BPC family protein
STRING	POPTR_0015s05200.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-89	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0074s0330.1.p

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]