PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0074s0320.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ZF-HD | ||||||||
Protein Properties | Length: 194aa MW: 21901.3 Da PI: 7.4659 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 93.5 | 1.8e-29 | 9 | 61 | 5 | 59 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 YkeCl+NhAaslG++a+DGCgEf+ + +++++ +l+CaACgCHRnFHR+ + + SapurV1A.0074s0320.1.p 9 LYKECLRNHAASLGSYATDGCGEFTLD--DTSSPYSLQCAACGCHRNFHRKVTYS 61 7*************************8..5578******************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.2E-24 | 9 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.148 | 10 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-18 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-24 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 103 | 169 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.26E-16 | 104 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-28 | 110 | 168 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MESDNTNDLY KECLRNHAAS LGSYATDGCG EFTLDDTSSP YSLQCAACGC HRNFHRKVTY 60 SNSSNRRDRT MHPPSSETVV MEMVDYAEGN NERDFRPPAM VVESGERGGK KRYRTKFTPE 120 QKEKMMVFAE KLGWKLQRKD EEDEVEKFCR EVGISRQVFK VWMHNHKNSS STTSASTGNA 180 SSLTTQFARP GAE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-22 | 111 | 173 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0074s0320.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374228.2 | 1e-126 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9SEZ1 | 4e-42 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A2K1XHC6 | 1e-125 | A0A2K1XHC6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s05220.1 | 1e-125 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 5e-44 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0074s0320.1.p |
Publications ? help Back to Top | |||
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