PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0072s0370.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 1036aa    MW: 115594 Da    PI: 7.5049
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0072s0370.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-40149226178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cqve+C+adls+ak+yhrrhkvC+ hska+++lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  SapurV1A.0072s0370.2.p 149 VCQVEDCRADLSTAKDYHRRHKVCDLHSKASKALVGNFMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTHP 226
                             6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-31144211IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.795147224IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-37148229IPR004333Transcription factor, SBP-box
PfamPF031102.7E-28150223IPR004333Transcription factor, SBP-box
SMARTSM00248480801830IPR002110Ankyrin repeat
SuperFamilySSF484035.29E-9803920IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.1E-9805921IPR020683Ankyrin repeat-containing domain
CDDcd002041.42E-8806919No hitNo description
SMARTSM0024835859889IPR002110Ankyrin repeat
SMARTSM0024820899928IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MEAKMGGKSR HLYGPVMSDL KAVGKKSLEW DLNDWKWDGD LFTATPLNSV PSDCRSRQLF  60
STGPELPEKA GLSNSSFSCS DDNDNLGVEK GKRELEKRSR AVFVEDQDLN DEAGSLNLKL  120
GGQVYPIMNE DAKSGKKTKV TMTASNHAVC QVEDCRADLS TAKDYHRRHK VCDLHSKASK  180
ALVGNFMQRF CQQCSRFHML QEFDEGKRSC RRRLAGHNKR RRKTHPENIV NEGSLNDEKS  240
SSYLLISLLR ILSNLQTNDS DQTKDQDLLS HLLRSLANLA STTNGRSLSG LLQGSPGLVN  300
ARATAGNLEK VQDVCTNSPE SARPSTSASK KDDCINSQDL LRPLGQCGSV PVPDLLQKRI  360
LDNDVQGGCQ AHSSPHSMPF FPSRNKLPAK TNEPEATVGR IKLNNLDLNI VYDNSQDYVE  420
NLDRSHAPVS TGMGSFNCPL WVQSDSHKTS LPRMSGYSDS TSSQSPSSSS GEAQSRTDRI  480
VVKLFGKDPN DFPIALRTQI LNWLSHSPTD IESYIRPGCI ILTIYLCLEK TKWEEVCLDL  540
GASLSRLLDT YRDPFWQTGW VYVRAQNSVS FIHNGRVVLD TPLPIKSSKN CRISSITPIA  600
VPLSERTQFV VRGFNIARSM TRVLCAVEGK YLAQEACNDL MEGADTMNEH DKPQCLNFQC  660
SVPNFVGRGF IEIEDHGLSS SFFPFIVAEP EVCSEIRMLE DAIQVAETAT DIHTLAETMD  720
IKNQSLDYIH EMGWLLHRSH LKFRLGQLDP NLVPFPFKRF EWLVQFSMDH DWCAVVRKLL  780
AIMFDGTVDA GEHSSFELAL FHMGLLHRAV RRNCRPMVEL LLRYTPDKQQ SGGPGTQQNQ  840
LADGRNSRFM FKPDAAGPAG LTPLHVAACS DGAENVLDAL TDDPGLVGID AWKKSRDNTG  900
LTPFDYACMR GHYSYIHLIQ RKIDKKSESS YVVLDIPSSL VDYNSKQKNG HKLPDFASLH  960
TEKIEMKAMQ QHLKVCERKL VYGAARTSLV YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY  1020
VFQPFRWEML KYGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-301492231084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0072s0370.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011624.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_011011632.10.0PREDICTED: squamosa promoter-binding-like protein 1 isoform X1
TrEMBLA0A2K1YUH60.0A0A2K1YUH6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16370.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1