PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0072s0370.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 1036aa MW: 115594 Da PI: 7.5049 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.6e-40 | 149 | 226 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+ hska+++lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ SapurV1A.0072s0370.1.p 149 VCQVEDCRADLSTAKDYHRRHKVCDLHSKASKALVGNFMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-31 | 144 | 211 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.795 | 147 | 224 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-37 | 148 | 229 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-28 | 150 | 223 | IPR004333 | Transcription factor, SBP-box |
SMART | SM00248 | 480 | 801 | 830 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 5.29E-9 | 803 | 920 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.1E-9 | 805 | 921 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.42E-8 | 806 | 919 | No hit | No description |
SMART | SM00248 | 35 | 859 | 889 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 20 | 899 | 928 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1036 aa Download sequence Send to blast |
MEAKMGGKSR HLYGPVMSDL KAVGKKSLEW DLNDWKWDGD LFTATPLNSV PSDCRSRQLF 60 STGPELPEKA GLSNSSFSCS DDNDNLGVEK GKRELEKRSR AVFVEDQDLN DEAGSLNLKL 120 GGQVYPIMNE DAKSGKKTKV TMTASNHAVC QVEDCRADLS TAKDYHRRHK VCDLHSKASK 180 ALVGNFMQRF CQQCSRFHML QEFDEGKRSC RRRLAGHNKR RRKTHPENIV NEGSLNDEKS 240 SSYLLISLLR ILSNLQTNDS DQTKDQDLLS HLLRSLANLA STTNGRSLSG LLQGSPGLVN 300 ARATAGNLEK VQDVCTNSPE SARPSTSASK KDDCINSQDL LRPLGQCGSV PVPDLLQKRI 360 LDNDVQGGCQ AHSSPHSMPF FPSRNKLPAK TNEPEATVGR IKLNNLDLNI VYDNSQDYVE 420 NLDRSHAPVS TGMGSFNCPL WVQSDSHKTS LPRMSGYSDS TSSQSPSSSS GEAQSRTDRI 480 VVKLFGKDPN DFPIALRTQI LNWLSHSPTD IESYIRPGCI ILTIYLCLEK TKWEEVCLDL 540 GASLSRLLDT YRDPFWQTGW VYVRAQNSVS FIHNGRVVLD TPLPIKSSKN CRISSITPIA 600 VPLSERTQFV VRGFNIARSM TRVLCAVEGK YLAQEACNDL MEGADTMNEH DKPQCLNFQC 660 SVPNFVGRGF IEIEDHGLSS SFFPFIVAEP EVCSEIRMLE DAIQVAETAT DIHTLAETMD 720 IKNQSLDYIH EMGWLLHRSH LKFRLGQLDP NLVPFPFKRF EWLVQFSMDH DWCAVVRKLL 780 AIMFDGTVDA GEHSSFELAL FHMGLLHRAV RRNCRPMVEL LLRYTPDKQQ SGGPGTQQNQ 840 LADGRNSRFM FKPDAAGPAG LTPLHVAACS DGAENVLDAL TDDPGLVGID AWKKSRDNTG 900 LTPFDYACMR GHYSYIHLIQ RKIDKKSESS YVVLDIPSSL VDYNSKQKNG HKLPDFASLH 960 TEKIEMKAMQ QHLKVCERKL VYGAARTSLV YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY 1020 VFQPFRWEML KYGSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-30 | 149 | 223 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 224 | KRRRKTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0072s0370.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209103 | 0.0 | AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011624.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 isoform X1 | ||||
Refseq | XP_011011632.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 isoform X1 | ||||
TrEMBL | A0A2K1YUH6 | 0.0 | A0A2K1YUH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s16370.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0072s0370.1.p |