PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0072s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28912.8 Da    PI: 8.3108
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0072s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.4e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  SapurV1A.0072s0360.1.p  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                            79***********************************************96 PP
2K-box101.89e-348617412100
                   K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                               + +++ e+++Lk+++e Lqr++R++lGedL+s+slkeLq+Leqq++++lk+iR++Kn+l+ ++i+elq+kek++q +n++L k++
  SapurV1A.0072s0360.1.p  86 DSQGNWTLEYNRLKAKVELLQRNHRNYLGEDLDSMSLKELQNLEQQIDTALKHIRARKNHLMSQSISELQRKEKAIQVQNNMLVKQI 172
                             55789*********************************************************************************9 PP

                   K-box  99 ee 100
                             +e
  SapurV1A.0072s0360.1.p 173 KE 174
                             86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.47E-42279No hitNo description
SuperFamilySSF554553.14E-34291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-31323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2886172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.49588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
DCMEKILERY ERYSYEERQL AATDFDSQGN WTLEYNRLKA KVELLQRNHR NYLGEDLDSM  120
SLKELQNLEQ QIDTALKHIR ARKNHLMSQS ISELQRKEKA IQVQNNMLVK QIKEKEKKDK  180
AVAQPALWDD QQNQGPHASS FLLSQPAGLP LPCLNIGGCY QEEADPEVRR NELDHALEPT  240
YSFHLGGYGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22185184MEF2 CHIMERA
6byy_B1e-22185184MEF2 CHIMERA
6byy_C1e-22185184MEF2 CHIMERA
6byy_D1e-22185184MEF2 CHIMERA
6bz1_A1e-22174173MEF2 CHIMERA
6bz1_B1e-22174173MEF2 CHIMERA
6bz1_C1e-22174173MEF2 CHIMERA
6bz1_D1e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0072s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0682680.0DQ068268.1 Salix discolor SAP1 (SAP1) mRNA, SAP1-1 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011648.11e-169PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-129AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ4PLC50.0Q4PLC5_SALDS; SAP1
STRINGcassava4.1_029935m1e-138(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]