PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0072s0340.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 498aa MW: 54284.9 Da PI: 8.0704 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.6 | 6.5e-42 | 166 | 241 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv +C++dls+ k+yh+rhkvCevh+k+p+v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q SapurV1A.0072s0340.1.p 166 CQVYDCNKDLSSSKDYHKRHKVCEVHTKTPQVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQ 241 **************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-32 | 161 | 227 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.052 | 163 | 240 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.46E-39 | 165 | 244 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-31 | 166 | 239 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MDFWSYASEG KGLLLSDEID LSADAFTRSR KASIGCDTEA VESSELLDLG FSEIPRKPFH 60 GSKTGAGMFG GSCVGIDSSK PAVVSPSCMI ASNSSMESGS NHSNSLMESN SPDSSLIDLK 120 LGRLADCKDA QNSKFPKERL LLSSVSPPAQ AKRARTASLR PQTSFCQVYD CNKDLSSSKD 180 YHKRHKVCEV HTKTPQVIVN GIEQRFCQQC SRFHLLVEFD DGKRSCRKRL AGHNERRRKP 240 QYGTKFLGSP LPKRTSFPFP NVLPGGAFCP QSYEEDNWRK CVKSEENSIY SSPSAIPMRN 300 GQLLPKSFLH LHGNRIQKTC GISPLDTEDC TISNTATTIH ELAGVSPSSR ALSLLSAESQ 360 DLSHSAGNIM VRPLVSQVGG AFQTLGIANK SLGVGSSEKY VSIGANSFGM NFIEVDDTGP 420 FGVSDSAHAA DLKVATAGFL HQSGFLNDKH RVSSENGSTV DWLQLSSHLQ RVEQQRNSMQ 480 VKHENEDFCR FGVPYRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 165 | 239 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0072s0340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209103 | 0.0 | AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011660.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_011011667.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_011011676.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_024467055.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | A0A2K1YUI3 | 0.0 | A0A2K1YUI3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s16400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 9e-44 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0072s0340.1.p |