PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0072s0330.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 183aa MW: 20261.1 Da PI: 8.6875

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0072s0330.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	149.4	3.5e-46	13	168	4	163
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkeelleelkveeenlksnvek 88 s +++ yv+CnfCnt+lav +P + ++ +vtv+CGhC +l ++ + + + +h + s+ ++v++++ +e+ SapurV1A.0072s0330.2.p 13 PSPDHHLSYVRCNFCNTVLAVRIPCKRMLDTVTVKCGHCNNLSFLSTRPPNlgHCFDI-DHHQLSF-------QGVSGNEKLLFKET 91 566789********************************986544443331122222.2212222.......22222222222222 PP YABBY 89 eesastsv..sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 + s + + s++++ vp+vp v++PPek+ r Ps+ynrf+keeiqrika+nP+i hreafs+aaknWa + SapurV1A.0072s0330.2.p 92 QGFCSDFGkgEYASSSTSSEPLVPKVPFVVKPPEKKHRLPSTYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 168 22222222002222356677789**************************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.6E-52	16	168	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-7	116	167	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-4	122	167	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010254	Biological Process	nectary development
GO:0010582	Biological Process	floral meristem determinacy
GO:0048479	Biological Process	style development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MNLEEKLIDA DVPSPDHHLS YVRCNFCNTV LAVRIPCKRM LDTVTVKCGH CNNLSFLSTR 60 PPNLGHCFDI DHHQLSFQGV SGNEKLLFKE TQGFCSDFGK GEYASSSTSS EPLVPKVPFV 120 VKPPEKKHRL PSTYNRFMKE EIQRIKAANP EIPHREAFST AAKNWARYLP NSAGAGSGGS 180 KN*

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.
UniProt	Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269\|PubMed:10225997, ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:10535738, ECO:0000269\|PubMed:11714690, ECO:0000269\|PubMed:15598802, ECO:0000269\|Ref.10}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00220	DAP	Transfer from AT1G69180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0072s0330.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:15598802}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209103	7e-46	AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024467056.1	1e-110	protein CRABS CLAW
Swissprot	Q76EJ0	8e-58	YABDL_ORYSJ; Protein DROOPING LEAF
Swissprot	Q8L925	5e-58	CRC_ARATH; Protein CRABS CLAW
TrEMBL	A0A3N7FSH3	1e-110	A0A3N7FSH3_POPTR; Uncharacterized protein
STRING	POPTR_0010s16410.1	1e-111	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	7e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0072s0330.2.p

Publications ? help Back to Top
Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development. Ann. Bot., 2014. 114(7): p. 1535-44 [PMID:24989787] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation. Nat Commun, 2017. 8(1): p. 1125 [PMID:29066759] Yamaguchi N, et al. Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nat Commun, 2018. 9(1): p. 5290 [PMID:30538233]