PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0071s0330.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 568aa    MW: 61985.8 Da    PI: 6.0536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0071s0330.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09379426455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0071s0330.3.p 379 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 426
                             8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.86E-11373430No hitNo description
SuperFamilySSF474594.84E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17375444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6379426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MEKDELYMSE GANTEALVWN SCGFGMEMQT NELKCSPEQL ANCFLDPNWN TLLDQSDPFE  60
SALSSIVSSP VASSANASFI SNAGVGGESV LIRELIGRLG NICSSGEMSP QSYINSTTNN  120
NSTNTSCYST PLNSPPKRNL SMMDSQMRGN LPILGHSLVN HPSLAPFPAD PGFVERAARY  180
SCFGSNNLGG LNGQFGLNES ELINRLTPRV EPGKLSRVPC NNSVKVAGSQ ANVQESNKSS  240
PLDGNLNSDK KFTRFSRPST PENGDSREES SVSEQIPGGE LSMKSQNDAS SRKRKSIPRG  300
KAKETPSPSA SDVKAAAEND ESSSKKSKSE ETNGSDKDSA KAKKEENGNQ KQKKDNSNPP  360
EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PKMEINMETF LSKDIFQSRG SMPHGLYPLD SSTPTFPYGY  480
QSQQGLALQN GMSRNAESQF SMNPLNAALR RNSSLQLPAL DGFSDASHQA STIWQDDLQS  540
FVQMGYGQNQ QQDFQGSEPP AQMKIEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0071s0330.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301743.30.0transcription factor bHLH77
TrEMBLA0A2K2BND60.0A0A2K2BND6_POPTR; BHLH family protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-73bHLH family protein