PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0069s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 220aa MW: 24827 Da PI: 6.8341 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 205.2 | 2.5e-63 | 6 | 170 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlks 84 ++f+ ++q+Cyv C+fC+til+vsvP +sl++vvtv CGhCtsllsvn++k+s +ll+ + s ++el+e+l+ + ++ k SapurV1A.0069s0070.1.p 6 HLFDLPDQICYVPCGFCTTILLVSVPCSSLSTVVTVICGHCTSLLSVNMKKFSflpfNLLT-----SLSNEDELKEQLRPDVNAPKG 87 7899**********************************************99944433344.....445578899999999888888 PP YABBY 85 nvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++k++ + s + ++++d+ + + + +++PPekr+r Psayn+fi+eei+r+k++nP i+h+eafs+aaknWah+P++h + SapurV1A.0069s0070.1.p 88 LEMKNSYNVISSDN---DQDHDHIINQGNRvINKPPEKRRRGPSAYNCFIREEIRRLKTENPRIAHKEAFSTAAKNWAHLPHVHCK 170 88776665555544...6777777777766589***************************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-60 | 11 | 169 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.76E-8 | 113 | 165 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.5E-5 | 118 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSSLNHLFDL PDQICYVPCG FCTTILLVSV PCSSLSTVVT VICGHCTSLL SVNMKKFSFL 60 PFNLLTSLSN EDELKEQLRP DVNAPKGLEM KNSYNVISSD NDQDHDHIIN QGNRVINKPP 120 EKRRRGPSAY NCFIREEIRR LKTENPRIAH KEAFSTAAKN WAHLPHVHCK DDGESSGLEE 180 ENGSWSCDAA DQFQVNVESK GLHERKFPRH SMWARTPFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0069s0070.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011034119.1 | 1e-129 | PREDICTED: axial regulator YABBY 4-like isoform X1 | ||||
Swissprot | Q9LDT3 | 9e-69 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2K1ZJQ3 | 1e-131 | A0A2K1ZJQ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s19330.1 | 1e-125 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-68 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0069s0070.1.p |
Publications ? help Back to Top | |||
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