PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0068s0430.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 363aa MW: 38019.1 Da PI: 6.2335

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0068s0430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.5	8.2e-37	83	191	4	110
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + +++s +++ SapurV1A.0068s0430.1.p 83 PKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAVsVNGTLKIPTESSAAAA 169 6899**********************************************************9998855532222222222222222 PP TCP 90 aaksaa.kskksqksaasalnl 110 a ++a ++k++++ +++++ SapurV1A.0068s0430.1.p 170 ADSDADgLEHKKKRKRPCNSDF 191 2222222333333333334444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.2E-31	86	183	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.187	87	141	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MDSQKHDHHT IEEIDQEQSI TVASLSDQTD PAALQLKEET LTDPEESREF EEHDSNIRRI 60 NSGGSNSCLV AHQVQRQQVA MAPKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH 120 KSDGETIRWL LEHAEPAIIA ATGTGTVPAI AVSVNGTLKI PTESSAAAAA DSDADGLEHK 180 KKRKRPCNSD FVDITEAARQ NSVSSGLAPI ATTSPQGLVP LWPMGTFMFP QGSSVGVGGT 240 NQAQFWAFPA TSTAPFLNMA ARPISSFVSA MQPGVQLAGN VSVGFGGESL GSGGSPPNTI 300 GSASSSSSGS SAAGASIGGG GGGGGGTQLL RDFSLEIYDK KELQFLGHPV NHDHQQAPCS 360 ES*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MDSQKHDHHT IEEIDQEQSI TVASLSDQTD PAALQLKEET LTDPEESREF EEHDSNIRRI  60
NSGGSNSCLV AHQVQRQQVA MAPKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH  120
KSDGETIRWL LEHAEPAIIA ATGTGTVPAI AVSVNGTLKI PTESSAAAAA DSDADGLEHK  180
KKRKRPCNSD FVDITEAARQ NSVSSGLAPI ATTSPQGLVP LWPMGTFMFP QGSSVGVGGT  240
NQAQFWAFPA TSTAPFLNMA ARPISSFVSA MQPGVQLAGN VSVGFGGESL GSGGSPPNTI  300
GSASSSSSGS SAAGASIGGG GGGGGGTQLL RDFSLEIYDK KELQFLGHPV NHDHQQAPCS  360
ES*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0068s0430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024442051.1	0.0	transcription factor TCP19
Swissprot	Q9LT89	2e-83	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A3N7G1I0	0.0	A0A3N7G1I0_POPTR; Uncharacterized protein
STRING	POPTR_0015s13660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-75	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0068s0430.1.p