PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0067s0400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 585aa MW: 63206 Da PI: 6.8348 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 327 | 385 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ SapurV1A.0067s0400.2.p 327 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 385 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 311 | 387 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 319 | 387 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 321 | 387 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 326 | 386 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 328 | 385 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MDKGWGLTLA SDPVSVFSSS TNNSPVGSFL KIKRDFITDH NMADSRSKNM FQFPGCLSAG 60 QDEQPPSAAQ EVDFFKEKII NDDSKTTSVT VKKENPIAEA ATRTSLGVNT GLHLANTRSD 120 QSTVDDGVSS DVDDKRSKNN ELAQLQVELQ KMNTENRRLK DMLGQVTSNY SALQMHFVAL 180 MQQHQQQNHG KESNTEQENV EGKSSEEKRH EDVVVPRQFM DLGPSAETDE LSNSSSDERT 240 PSGTPQNHVE DASPKNNAKL PHDQEKSTFR DGKRIGREES PESESQTWKA QKLDPSAGRG 300 AIEQSTDATM RKARVSVRAR SEAPMITDGC QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV 360 RKQVQRCAED RTILITTYEG NHNHPLPPAA MAMASTTAAA ASMLLSGSMS SADGIMNPNL 420 LARAILPGGS SNMATISASA PFPTVTLDLT QNPNPLQLQR PPPQFQVPFP GQPQNFGPVT 480 APQLPQVFSQ ALYNQSKFSG LQLSQEIGTS QLGHHAQPHL LHSGQQPSLS HDTLSAATAA 540 ITADPNFTAA LAAAISSIIG GANSNTTATN NNNSNATNNT SHRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 313 | 389 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0067s0400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216419 | 0.0 | AC216419.1 Populus trichocarpa clone POP072-N07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467300.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-150 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K1YE03 | 0.0 | A0A2K1YE03_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0021s00280.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-123 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0067s0400.2.p |