PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0067s0400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 586aa MW: 63334.2 Da PI: 6.9584 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.3e-30 | 328 | 386 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ SapurV1A.0067s0400.1.p 328 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 386 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-33 | 312 | 388 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 320 | 388 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 322 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 327 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 329 | 386 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MDKGWGLTLA SDPVSVFSSS TNNSPVGSFL KIKRDFITDH NMADSRSKNM FQFPGCLSAG 60 QDEQPPSAAQ EVDFFKEKII NDDSKTTSVT VKKENPIAEA ATRTSLGVNT GLHLANTRSD 120 QSTVDDGVSS DVDDKRSKNN EKLAQLQVEL QKMNTENRRL KDMLGQVTSN YSALQMHFVA 180 LMQQHQQQNH GKESNTEQEN VEGKSSEEKR HEDVVVPRQF MDLGPSAETD ELSNSSSDER 240 TPSGTPQNHV EDASPKNNAK LPHDQEKSTF RDGKRIGREE SPESESQTWK AQKLDPSAGR 300 GAIEQSTDAT MRKARVSVRA RSEAPMITDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP 360 VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTAA AASMLLSGSM SSADGIMNPN 420 LLARAILPGG SSNMATISAS APFPTVTLDL TQNPNPLQLQ RPPPQFQVPF PGQPQNFGPV 480 TAPQLPQVFS QALYNQSKFS GLQLSQEIGT SQLGHHAQPH LLHSGQQPSL SHDTLSAATA 540 AITADPNFTA ALAAAISSII GGANSNTTAT NNNNSNATNN TSHRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 314 | 390 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0067s0400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216419 | 0.0 | AC216419.1 Populus trichocarpa clone POP072-N07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024467299.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-149 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K1YDZ9 | 0.0 | A0A2K1YDZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0021s00280.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-122 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0067s0400.1.p |