PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0067s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 350aa MW: 38763.7 Da PI: 6.126 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 275 | 311 | 19 | 55 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ SapurV1A.0067s0070.1.p 275 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 311 45679*****************************885 PP | |||||||
2 | ELK | 37.8 | 4e-13 | 231 | 252 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr YsgyLgsLkqEF+ SapurV1A.0067s0070.1.p 231 ELKGQLLRRYSGYLGSLKQEFM 252 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.2E-18 | 95 | 139 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.4E-20 | 97 | 135 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-24 | 144 | 195 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-20 | 147 | 194 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.7E-10 | 231 | 252 | IPR005539 | ELK domain |
SMART | SM01188 | 8.6E-8 | 231 | 252 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.912 | 231 | 251 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.086 | 251 | 314 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-19 | 253 | 328 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-12 | 253 | 318 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-28 | 256 | 316 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.02E-12 | 263 | 315 | No hit | No description |
Pfam | PF05920 | 6.2E-17 | 271 | 310 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 289 | 312 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEGGGGDGGS STTSCMMAFG DNSNGLCPMM MPLMSSSSNT LFLPLPPPNN QGQNRIHSNA 60 SGSSSLILDD HHHNNTVTAT GCYFMDNNDG SSSSSSVKAK IMAHPHYHRL LGAYANCQKV 120 GAPPEVVARL EDACASAASM APANTGCIGE DPSLDQFMEA YCEMLTKYEQ ELSKPMKEAM 180 LFLQRVECQF KALTLSSPIS ACGDGNDRNV SSEEEVDVNS NFIDPQAEDQ ELKGQLLRRY 240 SGYLGSLKQE FMKKRKKGKL PKEARQQLLE WWSRHYKWPY PSESQKLALA ESTGLDQKQI 300 NNWFINQRKR HWKPSEDMQF VVMDAGHPHY YMDNVLGNPF PMDISPTLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 255 | LKQEFMKKRK |
2 | 252 | 256 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0067s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY755413 | 0.0 | AY755413.1 Populus alba x Populus tremula homeodomain protein ARBORKNOX1 (ARBORKNOX1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002564.1 | 0.0 | PREDICTED: homeobox protein SBH1 | ||||
Swissprot | P46608 | 1e-154 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | Q5XLC9 | 0.0 | Q5XLC9_POPCN; Homeodomain protein ARBORKNOX1 | ||||
STRING | XP_002518420.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-136 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0067s0070.1.p |
Publications ? help Back to Top | |||
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