PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0066s0390.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 462aa    MW: 50264.4 Da    PI: 8.8885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0066s0390.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000172547123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C+k F    nL+ H r H
  SapurV1A.0066s0390.3.p 25 FVCEICTKGFQWDQNLQLHRRGH 47
                            89******************988 PP
2zf-C2H213.60.0002101123123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H +t+
  SapurV1A.0066s0390.3.p 101 WKCDKCSKKYAVQSDWKAHAKTC 123
                             58******************998 PP
3zf-C2H211.50.00093131149523
                             TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                             dCg++Fsr++++ +H   +
  SapurV1A.0066s0390.3.p 131 DCGTVFSRRDSFITHRAFC 149
                             8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-62447No hitNo description
SMARTSM003550.0812547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0142547IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-42547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SMARTSM003552206696IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-489122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-696121No hitNo description
SMARTSM00355150101121IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MKYVSDPSAE VIALSPHTLM ATNRFVCEIC TKGFQWDQNL QLHRRGHNLP WKLKQRTTAE  60
IRKRVYVCPE PSCVHHNPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA  120
KTCGTKEYKC DCGTVFSRRD SFITHRAFCD ALAEENTKAN QGLVPNNMEP NLQGQVSNLI  180
PSLAINNNPN QPTMISSFNH LDAKNPLPLS QELRPTPPKT SSGSSMFSNG TSNLFGGSRN  240
MSPSLQLNAN SSAIFEGNGL HNLSGSASMS ATALLQKAAQ MGATASSNNV SSPMMQKSFV  300
TSMAPPTFGI MQAHNDQSHV IGGDDGYANQ FFSANGGVEN SVLNDMGIFS AVLDQNNSLF  360
KTMEHASSNN ENVFQGANSN PGLNSPTSGA NPSGLSRFSG DVMTVDFLGL GGSRQRNLHE  420
QHNHQEMEFT RGISHPRLQG LNHFEQAAAA AAALKKPMWD V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3497158364Zinc finger protein JACKDAW
5b3h_F3e-3497158364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0066s0390.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468250.0EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439761.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-104IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2I4KKG80.0A0A2I4KKG8_POPTR; C2H2 family protein
STRINGPOPTR_0013s01990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.12e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]