PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0066s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 517aa    MW: 55410.9 Da    PI: 9.0396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0066s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000280102123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k F    nL+ H r H
  SapurV1A.0066s0390.2.p  80 FVCEICTKGFQWDQNLQLHRRGH 102
                             89******************988 PP
2zf-C2H213.40.00023156178123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H +t+
  SapurV1A.0066s0390.2.p 156 WKCDKCSKKYAVQSDWKAHAKTC 178
                             58******************998 PP
3zf-C2H211.30.0011186204523
                             TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                             dCg++Fsr++++ +H   +
  SapurV1A.0066s0390.2.p 186 DCGTVFSRRDSFITHRAFC 204
                             8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.01480102IPR007087Zinc finger, C2H2
SMARTSM003550.08180102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-480102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355220121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.45E-5151200No hitNo description
SMARTSM00355150156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSNTTGGGTG SFSSGGTGGD EIHLSSLASS AAAAAASNSN GSTITQQPPL KRKRNLPGNP  60
DPSAEVIALS PHTLMATNRF VCEICTKGFQ WDQNLQLHRR GHNLPWKLKQ RTTAEIRKRV  120
YVCPEPSCVH HNPARALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHAKTCGT  180
KEYKCDCGTV FSRRDSFITH RAFCDALAEE NTKANQGLVP NNMEPNLQGQ VSNLIPSLAI  240
NNNPNQPTMI SSFNHLDAKN PLPLSQELRP TPPKTSSGSS MFSNGTSNLF GGSRNMSPSL  300
QLNANSSAIF EGNGLHNLSG SASMSATALL QKAAQMGATA SSNNVSSPMM QKSFVTSMAP  360
PTFGIMQAHN DQSHVIGGDD GYANQFFSAN GGVENSVLND MGIFSAVLDQ NNSLFKTMEH  420
ASSNNENVFQ GANSNPGLNS PTSGANPSGL SRFSGDVMTV DFLGLGGSRQ RNLHEQHNHQ  480
EMEFTRGISH PRLQGLNHFE QAAAAAAALK KPMWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34152213364Zinc finger protein JACKDAW
5b3h_F8e-34152213364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0066s0390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468250.0EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439761.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-111IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2I4KKG80.0A0A2I4KKG8_POPTR; C2H2 family protein
STRINGPOPTR_0013s01990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-101C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]