PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0066s0390.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 524aa MW: 56187.8 Da PI: 9.1603 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F nL+ H r H SapurV1A.0066s0390.1.p 87 FVCEICTKGFQWDQNLQLHRRGH 109 89******************988 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00023 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ SapurV1A.0066s0390.1.p 163 WKCDKCSKKYAVQSDWKAHAKTC 185 58******************998 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.0011 | 193 | 211 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + SapurV1A.0066s0390.1.p 193 DCGTVFSRRDSFITHRAFC 211 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.63E-6 | 86 | 109 | No hit | No description |
PROSITE profile | PS50157 | 10.014 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.081 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 87 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 128 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.7E-4 | 151 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.63E-6 | 158 | 183 | No hit | No description |
SMART | SM00355 | 150 | 163 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MSNTTGGGTG SFSSGGTGGD EIHLSSLASS AAAAAASNSN GSTITQQPPL KRKRNLPGNP 60 GVYSPQPYPS AEVIALSPHT LMATNRFVCE ICTKGFQWDQ NLQLHRRGHN LPWKLKQRTT 120 AEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA 180 HAKTCGTKEY KCDCGTVFSR RDSFITHRAF CDALAEENTK ANQGLVPNNM EPNLQGQVSN 240 LIPSLAINNN PNQPTMISSF NHLDAKNPLP LSQELRPTPP KTSSGSSMFS NGTSNLFGGS 300 RNMSPSLQLN ANSSAIFEGN GLHNLSGSAS MSATALLQKA AQMGATASSN NVSSPMMQKS 360 FVTSMAPPTF GIMQAHNDQS HVIGGDDGYA NQFFSANGGV ENSVLNDMGI FSAVLDQNNS 420 LFKTMEHASS NNENVFQGAN SNPGLNSPTS GANPSGLSRF SGDVMTVDFL GLGGSRQRNL 480 HEQHNHQEME FTRGISHPRL QGLNHFEQAA AAAAALKKPM WDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-34 | 159 | 220 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-34 | 159 | 220 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0066s0390.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146825 | 0.0 | EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439761.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 1e-107 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2I4KKG8 | 0.0 | A0A2I4KKG8_POPTR; C2H2 family protein | ||||
STRING | POPTR_0013s01990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 4e-97 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0066s0390.1.p |
Publications ? help Back to Top | |||
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