PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0065s0470.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 919aa    MW: 99798.2 Da    PI: 6.9989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0065s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18327427199
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F+
  SapurV1A.0065s0470.1.p 327 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTVTFS 412
                             99**************************555567778***************9989999999***9.******************** PP

                             E-SSSEE..EEEEE-S CS
                      B3  84 ldgrsefelvvkvfrk 99 
                             +++  e++lv++++++
  SapurV1A.0065s0470.1.p 413 RMD-PEGKLVMGFRKA 427
                             876.777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-30321435IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-20324427IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-23325426No hitNo description
SMARTSM010192.4E-21327428IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18327428IPR003340B3 DNA binding domain
PfamPF023624.3E-16327427IPR003340B3 DNA binding domain
PROSITE profilePS5105014.002592642IPR011124Zinc finger, CW-type
PfamPF074963.5E-11597639IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MASSSIKSCM NATCGVSTSS SGGWRKGWAL RSGDFATLCD NCGSAYEQSV FCEVFHSKDS  60
GWRECTSCGR RLHCGCIASK SMLELLDGGG VNCTSCSKSA GVSSVNGDEK PNGFGMSKID  120
DVGELQSASA DNQLTTETKL MHLGNCIDRI ATRNLLQLQS GVANGSYRKM KQEDILPPVG  180
EIASTSFCNF NHVSNASPQT AKPEIHRTTA AKDLYESLAQ TNLSISLGSS LGNPNPFPGG  240
GVDEKVLAKA SSPLQQGPRS RHLLPKPPKP ALVMDANAGM VSQIRVARPP AEGRGRNQLL  300
PRYWPRITDQ ELQQISGDPN STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPISQPE  360
GLPLRIQDVK GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MKLQAGDTVT FSRMDPEGKL  420
VMGFRKASNS IAMQDTQPSA IANGVPSSEC YFPGVFENLP VISGYSGLLQ SLKGSTDTHL  480
SALSKHLHSA SGDISWHKSE KQEARTRDGS LLPSLLAPER KRLRNIGSKS KRLLIDSLDA  540
LELKVTWEEA QDLLRPQPSI KPSIVTIEDH DFEEYEEPPV FGKTSIFVVR SIGGQEQWAQ  600
CDSCSKWRRL PIDVLLPPKW TCVDNAWDQS RCSCSAPEEL APMELENLQR QNKDFKKRRV  660
TGSHRPAQEH ESSGLDALAN AAILGDAGEQ STTAVATTTR HPRHRPGCSC IVCIQPPSGK  720
GKHKSTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR TQQHISGPKD EADVESSSKL  780
ASTPMDPSDN EARSGNELES KSQTNNLSNK LADSGKGHLD LNCHPDREED SQAGLARMSM  840
TSLLQVASLP LETYLKQNGL ASLSEQQASS ASHVPPQAGE NGGRIDEDCQ PASAAQEQES  900
GGEVDDEPGP DQSQNDPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693054342131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1735746KRRFKTLMMRKK
2735748KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0065s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291971e-123GU129197.1 Populus nigra MORC family ATPase (VP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323669.20.0B3 domain-containing transcription repressor VAL2
RefseqXP_024443965.10.0B3 domain-containing transcription repressor VAL2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K1XFA30.0A0A2K1XFA3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]