PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0063s0420.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRF

Protein Properties

Length: 346aa MW: 38437.9 Da PI: 8.8133

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0063s0420.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.2	6.2e-23	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r+rsrk +e+ SapurV1A.0063s0420.4.p 79 DSEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRSRNRSRKLVES 123 689**************************************9986 PP
2	QLQ	55.1	2.3e-19	19	53	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q+++L++Q+l++K+L+a++PvPp+Ll++i+k SapurV1A.0063s0420.4.p 19 FTVSQWHELEHQVLIFKCLNAGLPVPPDLLLPIRK 53 9********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-9	17	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.277	18	53	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.8E-14	19	52	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.143	79	123	IPR014977	WRC domain
Pfam	PF08879	1.4E-19	81	122	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MSNSSVTVAA AGSRSPPCFT VSQWHELEHQ VLIFKCLNAG LPVPPDLLLP IRKSFQLLSP 60 GYLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKL 120 VESQTTSQSL STVASEIATG SSSSGSRGYP TMPLPTLGNP GTLGLGSSMS RWQMESMPYG 180 VNSKDYRSLH GPKPEADEKT FLPESLENTR SFGMNSTVDS TWRLTSQVPA NPVPESRNGA 240 LLQNYPQVQT LQDFEPLTVD ATSSKQQQQH YLFGREFSSS GSMRRENQSL QPLFDEWPKC 300 RDMDSYLTDQ RSNKNSSAVQ LSMAIPMAPN PAARSYHSPN DEKDA*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MSNSSVTVAA AGSRSPPCFT VSQWHELEHQ VLIFKCLNAG LPVPPDLLLP IRKSFQLLSP  60
GYLHPSNLSY CSYFGKKIDS EPGRCRRTDG KKWRCSKDAH PDSKYCERHM NRSRNRSRKL  120
VESQTTSQSL STVASEIATG SSSSGSRGYP TMPLPTLGNP GTLGLGSSMS RWQMESMPYG  180
VNSKDYRSLH GPKPEADEKT FLPESLENTR SFGMNSTVDS TWRLTSQVPA NPVPESRNGA  240
LLQNYPQVQT LQDFEPLTVD ATSSKQQQQH YLFGREFSSS GSMRRENQSL QPLFDEWPKC  300
RDMDSYLTDQ RSNKNSSAVQ LSMAIPMAPN PAARSYHSPN DEKDA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0063s0420.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028066.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X1
Refseq	XP_011028067.1	0.0	PREDICTED: growth-regulating factor 4-like isoform X1
TrEMBL	A0A2K2B4N6	0.0	A0A2K2B4N6_POPTR; Uncharacterized protein
STRING	POPTR_0001s01480.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-37	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0063s0420.4.p