PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0063s0360.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 283aa MW: 31562.6 Da PI: 9.7789

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0063s0360.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm+++gLtl+h+kSHLQkYR+ SapurV1A.0063s0360.1.p 26 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLNGLTLYHLKSHLQKYRI 80 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.369	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-31	23	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-24	26	81	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.38E-16	26	83	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-9	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	6.0E-23	128	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEKTTFGDGG SYPYENGVVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKSVLRL 60 MGLNGLTLYH LKSHLQKYRI GQQARRQNDT EQRKESRGTS YVNFSKGSTG TTTSSPRIDK 120 EEGEIPDAEA LNCQIEVQKT LQEQLEVQKK LQMRIEAQGK YLQAILEKAQ KSLTQNLSDD 180 SNGDLKATGA HLTGFNSAIY SLMENLNAED RKPNITELKG INMKANGPAM HIQREGQKLG 240 TKNVKRRLQG DSIHFDLNTK GTYDFVSANG SELELKMLSY GR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0063s0360.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028078.1	1e-179	PREDICTED: myb family transcription factor APL-like isoform X1
Swissprot	C0SVS4	3e-82	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2K2B4M5	1e-176	A0A2K2B4M5_POPTR; Uncharacterized protein
STRING	POPTR_0003s09940.1	1e-163	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0063s0360.1.p

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]