PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0063s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 374aa    MW: 41887.6 Da    PI: 8.6921
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0063s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32194247255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  SapurV1A.0063s0050.1.p 194 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 247
                             9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15191247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28192247IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23194247IPR006447Myb domain, plants
PfamPF002492.4E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK STSTWRRAED GMDLGFWERA LDSRNSMSSM AKPDCFELSL  60
SNSKVSESNS NHLSNILHNT NTFNGNNLFH SSQQNQYTHQ QNHLHNHHPV LFQQQQGLSQ  120
ELGFLRPIRG IPVYQNPPSP FPFSQQTLDN THSHASSLVA NNTTAPSLSP YQSQGSMRSR  180
FMSRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS  240
HLQMYRTVKT TDRTAAPSAQ SDVFDNGSSG DTSEDLIFDI QNPRRSEMSM QQGRPNAHQD  300
KDYQALWSNS SSREAWLHGK LKQDSGGNLP PLEKDMDPKC LSYEKMLDIS SSAAVPGTGP  360
KNPNLEFTLG RPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-17195249357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-17195249357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-17195249357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-17195249357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0063s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028116.10.0PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ9C6162e-90KAN2_ARATH; Probable transcription factor KAN2
TrEMBLB9GZJ20.0B9GZJ2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-88G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]